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 5VYD | pdb_00005vyd

Crystal structure of phosphodiesterase domain of RhoPDE fusion protein from the Choanoflagellate Salpingoeca rosetta

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyHD-domain/PDEase-like 8067461 3000943 SCOP2B (2022-06-29)
ASCOP2 FamilyPDEase-like 8067460 4001423 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHD-domain/PDEase-like 8067461 3000943 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BJacaline5vydB1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: JacalinECOD (v295.2)
AJacaline5vydA1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: JacalinECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF002333'5'-cyclic nucleotide phosphodiesterase (PDEase_I)3'5'-cyclic nucleotide phosphodiesteraseDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Phosphodiesterase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR003607HD/PDEase domainDomain
A, B
IPR0020733'5'-cyclic nucleotide phosphodiesterase, catalytic domainDomain
A, B
IPR0230883'5'-cyclic nucleotide phosphodiesteraseFamily
A, B
IPR0369713'5'-cyclic nucleotide phosphodiesterase, catalytic domain superfamilyHomologous Superfamily
A, B
IPR0231743'5'-cyclic nucleotide phosphodiesterase, conserved siteConserved Site
A, B
IPR001425Archaeal/bacterial/fungal rhodopsinsFamily