5VXN | pdb_00005vxn

Structure of two RcsB dimers bound to two parallel DNAs.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth D]Ig_2e5vxnD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Ig_2ECOD (v294.1)
E [auth C]Ig_2e5vxnC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Ig_2ECOD (v294.1)
BIg_2e5vxnB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Ig_2ECOD (v294.1)
AGlyco_hydro_1e5vxnA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: Glyco_hydro_1ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F [auth D]3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (utative)
F [auth D]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (utative)
E [auth C]3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (utative)
E [auth C]1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (utative)
B3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (utative)
B1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (utative)
A3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (utative)
A1.10.10.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domainCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
E [auth C],
F [auth D]		PF00072Response regulator receiver domain (Response_reg)Response regulator receiver domainThis domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. Domain
A,
B,
E [auth C],
F [auth D]		PF00196Bacterial regulatory proteins, luxR family (GerE)Bacterial regulatory proteins, luxR familyDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth F],
H		DNA (5'-D(*GP*AP*TP*TP*TP*AP*GP*GP*AP*AP*AP*AP*AP*TP*CP*TP*TP*AP*GP*AP*TP*A)-3')---
C [auth E],
G		DNA (5'-D(*TP*TP*TP*AP*GP*GP*AP*AP*AP*AP*AP*TP*CP*TP*TP*AP*GP*A)-3')---
A,
B,
E [auth C],
F [auth D]		Transcriptional regulatory protein RcsB

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B,
E [auth C],
F [auth D]		IPR058245NreC/VraR/RcsB-like, phosphoacceptor receiver domainDomain
A,
B,
E [auth C],
F [auth D]		IPR039420Transcriptional regulatory protein WalR-likeFamily
A,
B,
E [auth C],
F [auth D]		IPR011006CheY-like superfamilyHomologous Superfamily
A,
B,
E [auth C],
F [auth D]		IPR000792Transcription regulator LuxR, C-terminalDomain
A,
B,
E [auth C],
F [auth D]		IPR030864Transcriptional regulatory protein RcsBFamily
A,
B,
E [auth C],
F [auth D]		IPR001789Signal transduction response regulator, receiver domainDomain
A,
B,
E [auth C],
F [auth D]		IPR016032Signal transduction response regulator, C-terminal effectorHomologous Superfamily
A,
B,
E [auth C],
F [auth D]		IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily