5VU2 | pdb_00005vu2

Electron cryo-microscopy of "immature" Chikungunya VLP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth I]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth M]Alpha_E1_glycop_2nde5vu2M1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
A [auth M]Alpha_E1_glycop_1ste5vu2M2 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
B [auth A]Alpha_E2_glycop_2nde5vu2A3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_2ndECOD (1.6)
B [auth A]Alpha_E2_glycop_1ste5vu2A2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_1stECOD (1.6)
B [auth A]Alpha_E2_glycop_3rde5vu2A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_3rdECOD (1.6)
E [auth B]Alpha_E2_glycop_2nde5vu2B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_2ndECOD (1.6)
E [auth B]Alpha_E2_glycop_1ste5vu2B2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_1stECOD (1.6)
E [auth B]Alpha_E2_glycop_3rde5vu2B3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_3rdECOD (1.6)
F [auth N]Alpha_E1_glycop_2nde5vu2N1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
F [auth N]Alpha_E1_glycop_1ste5vu2N2 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
H [auth C]Alpha_E2_glycop_2nde5vu2C2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_2ndECOD (1.6)
H [auth C]Alpha_E2_glycop_1ste5vu2C3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_1stECOD (1.6)
H [auth C]Alpha_E2_glycop_3rde5vu2C1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_3rdECOD (1.6)
I [auth O]Alpha_E1_glycop_2nde5vu2O1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
I [auth O]Alpha_E1_glycop_1ste5vu2O2 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
K [auth D]Alpha_E2_glycop_2nde5vu2D2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_2ndECOD (1.6)
K [auth D]Alpha_E2_glycop_1ste5vu2D3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_1stECOD (1.6)
K [auth D]Alpha_E2_glycop_3rde5vu2D1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E2_glycop_3rdECOD (1.6)
L [auth P]Alpha_E1_glycop_2nde5vu2P2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
L [auth P]Alpha_E1_glycop_1ste5vu2P1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
C [auth U]Alpha_E3_glycope5vu2U1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
D [auth V]Alpha_E3_glycope5vu2V1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
G [auth W]Alpha_E3_glycope5vu2W1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
J [auth X]Alpha_E3_glycope5vu2X1 A: a+b two layersX: Glycoprotein E3 (From Topology)H: Glycoprotein E3 (From Topology)T: Glycoprotein E3F: Alpha_E3_glycopECOD (1.6)
M [auth I]Peptidase_S3e5vu2I1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
N [auth J]Peptidase_S3e5vu2J1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
O [auth K]Peptidase_S3e5vu2K1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
P [auth L]Peptidase_S3e5vu2L1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
Q [auth E]Alpha_E1_glycop_likee5vu2E1 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
S [auth F]Alpha_E1_glycop_likee5vu2F1 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
U [auth G]Alpha_E1_glycop_likee5vu2G1 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
W [auth H]Alpha_E1_glycop_likee5vu2H1 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E1 envelope glycoprotein
C [auth U],
D [auth V],
G [auth W],
J [auth X]
E3 envelope glycoprotein
M [auth I],
N [auth J],
O [auth K],
P [auth L]
capsid protein
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
E1 envelope glycoprotein
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
E2 envelope glycoprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR002533Alphavirus E3 spike glycoproteinDomain
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR014756Immunoglobulin E-setHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR000936Alphavirus E2 glycoproteinFamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR000930Peptidase S3, togavirinDomain
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR002548Alphavirus E1 glycoproteinDomain
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR002533Alphavirus E3 spike glycoproteinDomain
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR014756Immunoglobulin E-setHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR009003Peptidase S1, PA clanHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR000936Alphavirus E2 glycoproteinFamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR000930Peptidase S3, togavirinDomain
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR002548Alphavirus E1 glycoproteinDomain
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR002533Alphavirus E3 spike glycoproteinDomain
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR014756Immunoglobulin E-setHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR009003Peptidase S1, PA clanHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR000936Alphavirus E2 glycoproteinFamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR000930Peptidase S3, togavirinDomain
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR002548Alphavirus E1 glycoproteinDomain
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR002533Alphavirus E3 spike glycoproteinDomain
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR014756Immunoglobulin E-setHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR009003Peptidase S1, PA clanHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR000936Alphavirus E2 glycoproteinFamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR000930Peptidase S3, togavirinDomain
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR002548Alphavirus E1 glycoproteinDomain
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily