5VU2 | pdb_00005vu2

Electron cryo-microscopy of "immature" Chikungunya VLP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth I]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyTrypsin-like serine proteases 8071557 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Q [auth E]e5vu2E1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
S [auth F]ATP-synt_Epse5vu2F1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
U [auth G]ATP-synt_Epse5vu2G1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
W [auth H]ATP-synt_Epse5vu2H1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
M [auth I]e5vu2I1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
N [auth J]ATP-synt_Epse5vu2J1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
O [auth K]ATP-synt_Epse5vu2K1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
P [auth L]ATP-synt_Epse5vu2L1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
C [auth U]e5vu2U1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
D [auth V]ATP-synt_Epse5vu2V1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
G [auth W]ATP-synt_Epse5vu2W1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
J [auth X]ATP-synt_Epse5vu2X1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
A [auth M]e5vu2M1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
B [auth A]e5vu2A1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF:ECOD (v294.1)
E [auth B]ATP-synt_Epse5vu2B1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
F [auth N]ATP-synt_Epse5vu2N1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
I [auth O]ATP-synt_Epse5vu2O1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
K [auth D]ATP-synt_Epse5vu2D1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
L [auth P]ATP-synt_Epse5vu2P1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
H [auth C]ATP-synt_Epse5vu2C1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
E2 envelope glycoprotein
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
E1 envelope glycoprotein
M [auth I],
N [auth J],
O [auth K],
P [auth L]
capsid protein
C [auth U],
D [auth V],
G [auth W],
J [auth X]
E3 envelope glycoprotein
E1 envelope glycoprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR002533Alphavirus E3 spike glycoproteinDomain
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR014756Immunoglobulin E-setHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR009003Peptidase S1, PA clanHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR000936Alphavirus E2 glycoproteinFamily
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR000930Peptidase S3, togavirinDomain
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR002548Alphavirus E1 glycoproteinDomain
R [auth Q],
T [auth R],
V [auth S],
X [auth T]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR002533Alphavirus E3 spike glycoproteinDomain
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR014756Immunoglobulin E-setHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR009003Peptidase S1, PA clanHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR000936Alphavirus E2 glycoproteinFamily
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR000930Peptidase S3, togavirinDomain
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR002548Alphavirus E1 glycoproteinDomain
Q [auth E],
S [auth F],
U [auth G],
W [auth H]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR002533Alphavirus E3 spike glycoproteinDomain
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR014756Immunoglobulin E-setHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR009003Peptidase S1, PA clanHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR000936Alphavirus E2 glycoproteinFamily
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR000930Peptidase S3, togavirinDomain
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR002548Alphavirus E1 glycoproteinDomain
M [auth I],
N [auth J],
O [auth K],
P [auth L]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR002533Alphavirus E3 spike glycoproteinDomain
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR014756Immunoglobulin E-setHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR000936Alphavirus E2 glycoproteinFamily
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR000930Peptidase S3, togavirinDomain
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR002548Alphavirus E1 glycoproteinDomain
C [auth U],
D [auth V],
G [auth W],
J [auth X]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
IPR002533Alphavirus E3 spike glycoproteinDomain
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
IPR014756Immunoglobulin E-setHomologous Superfamily
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
IPR000936Alphavirus E2 glycoproteinFamily
IPR000930Peptidase S3, togavirinDomain
IPR002548Alphavirus E1 glycoproteinDomain
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily