5UDH
HHARI/ARIH1-UBCH7~Ubiquitin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RING/U-box like | 8041693 | 3000160 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | RING/U-box like | 8041693 | 3000160 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | UBC-like | 8034823 | 3000570 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | UBC-like | 8034823 | 3000570 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1815_N | e5udhA1 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: KOG1815_N | ECOD (1.6) |
A | KOG1815_C | e5udhA5 | A: alpha bundles | X: N-cbl like | H: C-terminal domain of E3 ubiquitin-protein ligase ARIH1 (From Topology) | T: C-terminal domain of E3 ubiquitin-protein ligase ARIH1 | F: KOG1815_C | ECOD (1.6) |
A | zf-C3HC4_4 | e5udhA3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
A | IBR_2 | e5udhA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: IBR domain | F: IBR_2 | ECOD (1.6) |
A | IBR | e5udhA4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: IBR domain | F: IBR | ECOD (1.6) |
C [auth B] | KOG1815_N | e5udhB2 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: KOG1815_N | ECOD (1.6) |
C [auth B] | KOG1815_C | e5udhB5 | A: alpha bundles | X: N-cbl like | H: C-terminal domain of E3 ubiquitin-protein ligase ARIH1 (From Topology) | T: C-terminal domain of E3 ubiquitin-protein ligase ARIH1 | F: KOG1815_C | ECOD (1.6) |
C [auth B] | zf-C3HC4_4 | e5udhB3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
C [auth B] | IBR_2 | e5udhB4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: Ariadne-1 protein homolog | F: IBR_2 | ECOD (1.6) |
C [auth B] | IBR | e5udhB1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: Ariadne-1 protein homolog | F: IBR | ECOD (1.6) |
B [auth C] | UQ_con | e5udhC1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
D | UQ_con | e5udhD1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
E | ubiquitin_1 | e5udhE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.1750 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
C [auth B] | 1.20.120.1750 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CATH (4.3.0) | |
B [auth C] | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
D | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF21235 | E3 ubiquitin-protein ligase ARIH1, UBA-like domain (ARI1_UBAl) | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | This entry represents the UBA-like (UBL) domain from the Human Homologue of Ariadne (HHARI) and its homologues, which are Ariadne subfamily E3 ubiquitin ligase proteins [1-4]. This domain binds to Ubiquitin and NEDD8 [3,4]. | Domain |
A, C [auth B] | PF00097 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) | Zinc finger, C3HC4 type (RING finger) | The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ... | Domain |
A, C [auth B] | PF01485 | IBR domain, a half RING-finger domain (IBR) | IBR domain, a half RING-finger domain | The IBR (In Between Ring fingers) domain is often found to occur between pairs of ring fingers (Pfam:PF00097). This domain has also been called the C6HC domain and DRIL (for double RING finger linked) domain [2]. Proteins that contain two Ring fing ... | Domain |
A, C [auth B] | PF22191 | IBR domain (IBR_1) | IBR domain | This entry represents an IBR domain, related to Pfam:PF01485. | Domain |
B [auth C], D | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR002867 | IBR domain | Domain |
A, C [auth B] | IPR044066 | TRIAD supradomain | Domain |
A, C [auth B] | IPR048962 | E3 ubiquitin-protein ligase ARIH1-like, UBA-like domain | Domain |
A, C [auth B] | IPR018957 | Zinc finger, C3HC4 RING-type | Domain |
A, C [auth B] | IPR045840 | Ariadne domain | Domain |
A, C [auth B] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
A, C [auth B] | IPR031127 | E3 ubiquitin ligase RBR family | Family |
A, C [auth B] | IPR001841 | Zinc finger, RING-type | Domain |
B [auth C], D | IPR050113 | Ubiquitin-conjugating enzyme | Family |
B [auth C], D | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily |
B [auth C], D | IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain |
B [auth C], D | IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |