5TZN | pdb_00005tzn

Structure of the viral immunoevasin m12 (Smith) bound to the natural killer cell receptor NKR-P1B (B6)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5tzna1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d5tzna2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D [auth W]	d5tznw_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)
D [auth W]	SCOP2B Superfamily	C-type lectin-like	8065452	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth G]	UNK_F_TYPE	e5tznG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: m04 immunoevasin (From Topology)	T: m04 immunoevasin	F: UNK_F_TYPE	ECOD (1.6)
B [auth F]	UNK_F_TYPE	e5tznF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: m04 immunoevasin (From Topology)	T: m04 immunoevasin	F: UNK_F_TYPE	ECOD (1.6)
A	Lectin_C_1	e5tznA1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C_1	ECOD (1.6)
D [auth W]	Lectin_C_1	e5tznW1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
D [auth W]	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth W]	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth F], C [auth G]	Glycoprotein family protein m12	-	-	cellular anatomical structure membrane
A, D [auth W]	Killer cell lectin-like receptor subfamily B member 1B allele B	binding carbohydrate binding molecular transducer activity signaling receptor activity identical protein binding protein binding	regulation of immune effector process lymphocyte mediated immunity regulation of cellular process response to stimulus negative regulation of biological process negative regulation of lymphocyte mediated immunity response to biotic stimulus negative regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity regulation of biological process regulation of natural killer cell mediated immunity immune response regulation of immune effector process lymphocyte mediated immunity regulation of cellular process response to stimulus negative regulation of biological process negative regulation of lymphocyte mediated immunity response to biotic stimulus negative regulation of natural killer cell mediated immunity leukocyte mediated immunity regulation of immune system process natural killer cell mediated immunity regulation of biological process regulation of natural killer cell mediated immunity immune response response to other organism regulation of innate immune response negative regulation of immune response negative regulation of immune effector process response to external stimulus leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity regulation of response to stimulus defense response to other organism negative regulation of response to external stimulus negative regulation of defense response natural killer cell mediated cytotoxicity regulation of immune response regulation of cell killing negative regulation of natural killer cell mediated cytotoxicity regulation of defense response regulation of response to biotic stimulus regulation of natural killer cell mediated cytotoxicity biological process involved in interspecies interaction between organisms regulation of response to external stimulus negative regulation of response to biotic stimulus response to stress regulation of response to stress negative regulation of leukocyte mediated cytotoxicity negative regulation of cellular process innate immune response response to external biotic stimulus negative regulation of cell killing defense response negative regulation of response to stimulus regulation of leukocyte mediated cytotoxicity biological regulation defense response to symbiont regulation of lymphocyte mediated immunity negative regulation of immune system process immune system process cellular process negative regulation of leukocyte mediated immunity cell killing negative regulation of innate immune response	cell periphery cellular anatomical structure plasma membrane membrane cell surface external side of plasma membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth F], C [auth G]	IPR022022	Immune evasion protein	Family
A, D [auth W]	IPR001304	C-type lectin-like	Domain
A, D [auth W]	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, D [auth W]	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain
A, D [auth W]	IPR051527	Killer cell lectin-like receptor subfamily B	Family
A, D [auth W]	IPR016187	C-type lectin fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.