5T02 | pdb_00005t02

Structural characterisation of mutant Asp39Ala of thioesterase (NmACH) from Neisseria meningitidis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5t02a_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)
B	d5t02b_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)
C	d5t02c_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)
D	d5t02d_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)
E	d5t02e_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)
F	d5t02f_	Alpha and beta proteins (a+b)	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase	automated matches	automated matches	(Neisseria meningitidis ) [TaxId: 487 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8081260	3000149	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8081260	3000149	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8081260	3000149	SCOP2B (2022-06-29)
D	SCOP2 Family	4HBT-like	8081259	4001116	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8081260	3000149	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8081260	3000149	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thioesterase/thiol ester dehydrase-isomerase-like	8081260	3000149	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TcdA1_RBD_2	e5t02A1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: TcdA1_RBD_2	ECOD (v294.1)
B	TcdA1_RBD_2	e5t02B1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: TcdA1_RBD_2	ECOD (v294.1)
C	TcdA1_RBD_2	e5t02C1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: TcdA1_RBD_2	ECOD (v294.1)
D	TcdA1_RBD_2	e5t02D1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: TcdA1_RBD_2	ECOD (v294.1)
E	TcdA1_RBD_2	e5t02E1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: TcdA1_RBD_2	ECOD (v294.1)
F	TcdA1_RBD_2	e5t02F1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: TcdA1_RBD_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
B	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
C	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
D	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
E	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)
F	3.10.129.10	Alpha Beta	Roll	Thiol Ester Dehydrase	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Acyl-CoA hydrolase	hydrolase activity, acting on ester bonds thiolester hydrolase activity deacylase activity hydrolase activity fatty acyl-CoA hydrolase activity catalytic activity long-chain fatty acyl-CoA hydrolase activity acyl-CoA hydrolase activity	nucleoside phosphate metabolic process primary metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR040170	Cytosolic acyl coenzyme A thioester hydrolase	Family
A, B, C, D, E A, B, C, D, E, F	IPR033120	Hotdog acyl-CoA thioesterase (ACOT)-type domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR029069	HotDog domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR006683	Thioesterase domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.