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 5ODL | pdb_00005odl

Single-stranded DNA-binding protein from bacteriophage Enc34 in complex with ssDNA

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyNucleic acid-binding proteins 8091430 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASBP_bac_1e5odlA1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: SBP_bac_1ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10991Enterobacter phage Enc34, ssDNA-binding protein (Enc34_ssDNA-bd)Enterobacter phage Enc34, ssDNA-binding proteinssDNA-binding protein from Enterobacter phage Enc34 (Swiss:H6WYG2) shows a globular shape with a mixed alpha/beta architecture consisting mainly of beta-strands that clearly resembles the oligosaccharide/ oligonucleotide-binding (OB)-fold [1]. The ch ...ssDNA-binding protein from Enterobacter phage Enc34 (Swiss:H6WYG2) shows a globular shape with a mixed alpha/beta architecture consisting mainly of beta-strands that clearly resembles the oligosaccharide/ oligonucleotide-binding (OB)-fold [1]. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth D]oligo(T)---
single-stranded DNA-binding protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022595Enterobacter phage Enc34, ssDNA-binding proteinFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily