Structure of the Cascade-I-Fv R-loop complex from Shewanella putrefaciens
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | Cas5fv_helical | e5o6uF1 | A: alpha bundles | X: Phosphorylase/hydrolase-like | H: Ribosomal protein S5 domain 2-like | T: Ribosomal protein S5 domain 2-like | F: Cas5fv_helical | ECOD (develop294) |
| F | ACP | e5o6uF2 | A: alpha bundles | X: Phosphorylase/hydrolase-like | H: Ribosomal protein S5 domain 2-like | T: Ribosomal protein S5 domain 2-like | F: ACP | ECOD (develop294) |
| E | Cas5fv_helical | e5o6uE1 | A: alpha bundles | X: Phosphorylase/hydrolase-like | H: Ribosomal protein S5 domain 2-like | T: Ribosomal protein S5 domain 2-like | F: Cas5fv_helical | ECOD (develop294) |
| D | Cas5fv_helical | e5o6uD1 | A: alpha bundles | X: Phosphorylase/hydrolase-like | H: Ribosomal protein S5 domain 2-like | T: Ribosomal protein S5 domain 2-like | F: Cas5fv_helical | ECOD (develop294) |
| C | Cas5fv_helical | e5o6uC1 | A: alpha bundles | X: Phosphorylase/hydrolase-like | H: Ribosomal protein S5 domain 2-like | T: Ribosomal protein S5 domain 2-like | F: Cas5fv_helical | ECOD (develop294) |
| B | Sel1 | e5o6uB1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sel1 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.30.70.2540 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CRISPR-associated endoribonuclease Cas6/Csy4 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| H [auth I] | target DNA | - | - | - |
| G [auth H] | non-target DNA | - | - | - |
| Uncharacterized protein | - | - | - | |
| Uncharacterized protein | - | - | - | |
| CRISPR-associated protein, Csy4 family |
| - | ||
| crRNA | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR045374 | Cas5fv helical domain | Domain | |
| IPR047583 | CRISPR-associated protein Cas5fv | Family | |
| IPR049889 | Type I-Fv CRISPR-associated protein Cas7fv-like | Family | |
| IPR013396 | CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST | Family | |
| IPR042564 | CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST superfamily | Homologous Superfamily |














