5NJ8
Structural basis for aryl hydrocarbon receptor mediated gene activation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HLH | e5nj8A2 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: HLH | ECOD (1.6) |
A | PAS_1 | e5nj8A1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_1 | ECOD (1.6) |
C | HLH | e5nj8C2 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: HLH | ECOD (1.6) |
C | PAS_1 | e5nj8C1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_1 | ECOD (1.6) |
D | HLH | e5nj8D2 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: HLH | ECOD (1.6) |
D | PAS_11_1 | e5nj8D1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11_1 | ECOD (1.6) |
B | HLH | e5nj8B2 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: HLH | ECOD (1.6) |
B | PAS_11_1 | e5nj8B1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS_11_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00989 | PAS fold (PAS) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (M ... | Domain | |
PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain | |
PF00989 | PAS fold (PAS) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (M ... | Domain | |
PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013655 | PAS fold-3 | Domain | |
IPR039091 | Aryl hydrocarbon receptor/Aryl hydrocarbon receptor repressor | Family | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR036638 | Helix-loop-helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR033348 | Aryl hydrocarbon receptor, basic helix-loop-helix domain | Domain | |
IPR013767 | PAS fold | Domain | |
IPR000014 | PAS domain | Domain | |
IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | Domain | |
IPR050933 | Circadian Clock Transcription Factors | Family | |
IPR013767 | PAS fold | Domain | |
IPR001067 | Nuclear translocator | Family | |
IPR000014 | PAS domain | Domain | |
IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | Domain | |
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR036638 | Helix-loop-helix DNA-binding domain superfamily | Homologous Superfamily |