5MKC | pdb_00005mkc

Crystal structure of the RrgA Jo.In complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	PI3Ka	e5mkcF1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: PI3Ka	ECOD (v294.1)
E	PI3Ka	e5mkcE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: PI3Ka	ECOD (v294.1)
D	PI3Ka	e5mkcD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: PI3Ka	ECOD (v294.1)
C	PI3Ka	e5mkcC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: PI3Ka	ECOD (v294.1)
B	PI3Ka	e5mkcB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: PI3Ka	ECOD (v294.1)
A	PI3Ka	e5mkcA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: PI3Ka	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.60.40.2110	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
E	2.60.40.2110	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D	2.60.40.2110	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	2.60.40.2110	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.2110	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.2110	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF21426	Tip pilin GBS104-like, Ig-like domain (GBS104-like_Ig)	Tip pilin GBS104-like, Ig-like domain	This domain is found in Streptococcus agalactiae tip pilin GBS104 and similar proteins [1-4]. It is usually associated with von Willebrand factor type A domain (e.g. Pfam:PF00092), which inserts into the domain core composed of two sequentially segre ...	This domain is found in Streptococcus agalactiae tip pilin GBS104 and similar proteins [1-4]. It is usually associated with von Willebrand factor type A domain (e.g. Pfam:PF00092), which inserts into the domain core composed of two sequentially segregated fragments. Members of this entry are likely to contain an intramolecular isopeptide bond. The domain represented by this entry does not include the two N-terminal strands that precede the inserted von Willebrand factor type A domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Cell wall surface anchor family protein (Jo),Cell wall surface anchor family protein (In)	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR049319	Tip pilin GBS104-like, Ig-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002035	von Willebrand factor, type A	Domain
A, B, C, D, E A, B, C, D, E, F	IPR041033	SpaA-like, prealbumin fold domain subgroup 1	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.