5MG3
EM fitted model of bacterial holo-translocon
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth E] | SCOP2B Superfamily | Protein translocase subunit SecE-like | 8053308 | 3002174 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | Galactose mutarotase-like | 8101843 | 3000035 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | YidC transmembrane domain-like | 8101842 | 3002720 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth Y] | SecY | e5mg3Y1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: SecY | ECOD (1.6) |
B [auth E] | SecE | e5mg3E1 | A: extended segments | X: Preprotein translocase SecE subunit (From Topology) | H: Preprotein translocase SecE subunit (From Topology) | T: Preprotein translocase SecE subunit | F: SecE | ECOD (1.6) |
C [auth G] | SecG | e5mg3G1 | A: alpha bundles | X: Protein-export membrane protein secG (From Topology) | H: Protein-export membrane protein secG (From Topology) | T: Protein-export membrane protein secG | F: SecG | ECOD (1.6) |
D | secD | e5mg3D2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: secD | ECOD (1.6) |
D | SecD_SecF | e5mg3D1 | A: alpha bundles | X: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | H: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | T: Multidrug efflux transporter AcrB transmembrane domain | F: SecD_SecF | ECOD (1.6) |
D | secD_1 | e5mg3D3 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: secD_1 | ECOD (1.6) |
E [auth F] | SecD_SecF | e5mg3F1 | A: alpha bundles | X: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | H: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | T: Multidrug efflux transporter AcrB transmembrane domain | F: SecD_SecF | ECOD (1.6) |
E [auth F] | 3a0501s07 | e5mg3F2 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: 3a0501s07 | ECOD (1.6) |
F [auth C] | YidC_periplas | e5mg3C2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: YidC_periplas | ECOD (1.6) |
F [auth C] | 60KD_IMP | e5mg3C1 | A: alpha bundles | X: Membrane protein insertase YidC-related (From Homology) | H: Membrane protein insertase YidC-related | T: Membrane protein insertase YidC | F: 60KD_IMP | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth Y] | PF00344 | SecY (SecY) | SecY | - | Family |
B [auth E] | PF00584 | SecE/Sec61-gamma subunits of protein translocation complex (SecE) | SecE/Sec61-gamma subunits of protein translocation complex | - | Family |
PF21760 | Protein translocase subunit SecDF, P1 domain, N-terminal (SecD_1st) | Protein translocase subunit SecDF, P1 domain, N-terminal | This domain is found in Protein translocase subunit SecDF from Thermus thermophilus, which belongs to the RND superfamily. SecDF shows 12 transmembrane (TM) regions and 6 periplasmic regions (P1-P6). This entry represents the N-terminal region of the ... | Domain | |
PF22599 | SecDF, P1 head subdomain (SecDF_P1_head) | SecDF, P1 head subdomain | This entry represents the head subdomain from P1 domain from SecDF proteins, which constitutes a critical element for proton transport [1-3]. P1 domain P1 binds an unfolded protein, and undergoes functionally important conformational changes. SecDF f ... | Domain | |
PF02355 | Protein export membrane protein (SecD_SecF) | Protein export membrane protein | - | Family | |
PF13721 | SecD export protein N-terminal TM region (SecD-TM1) | SecD export protein N-terminal TM region | - | Family | |
E [auth F] | PF02355 | Protein export membrane protein (SecD_SecF) | Protein export membrane protein | - | Family |
E [auth F] | PF07549 | SecD/SecF GG Motif (Sec_GG) | SecD/SecF GG Motif | - | Motif |
F [auth C] | PF02096 | 60Kd inner membrane protein (60KD_IMP) | 60Kd inner membrane protein | - | Family |
F [auth C] | PF14849 | YidC periplasmic domain (YidC_periplas) | YidC periplasmic domain | This is the periplasmic domain of YidC, a bacterial membrane protein which is required for the insertion and assembly of inner membrane proteins [1,2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | General secretory pathway (Sec) | Protein translocase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |