5LP3 | pdb_00005lp3

Three tetrameric rings of Isoaspartyl Dipeptidase fitted in an EM volume.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Metallo-dependent hydrolases	8034168	3000428	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Composite domain of metallo-dependent hydrolases	8034166	3000176	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Isoaspartyl-dipeptidase	e5lp3L1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
L	Amidohydro_1_N	e5lp3L2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
K	Isoaspartyl-dipeptidase	e5lp3K1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
K	Amidohydro_1_N	e5lp3K2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
J	Isoaspartyl-dipeptidase	e5lp3J2	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
J	Amidohydro_1_N	e5lp3J1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
I	Isoaspartyl-dipeptidase	e5lp3I1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
I	Amidohydro_1_N	e5lp3I2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
H	Isoaspartyl-dipeptidase	e5lp3H1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
H	Amidohydro_1_N	e5lp3H2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
G	Isoaspartyl-dipeptidase	e5lp3G2	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
G	Amidohydro_1_N	e5lp3G1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
F	Isoaspartyl-dipeptidase	e5lp3F1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
F	Amidohydro_1_N	e5lp3F2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
E [auth A]	Isoaspartyl-dipeptidase	e5lp3A1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
E [auth A]	Amidohydro_1_N	e5lp3A2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
D [auth E]	Isoaspartyl-dipeptidase	e5lp3E1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
D [auth E]	Amidohydro_1_N	e5lp3E2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
C [auth D]	Isoaspartyl-dipeptidase	e5lp3D2	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
C [auth D]	Amidohydro_1_N	e5lp3D1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
B [auth C]	Isoaspartyl-dipeptidase	e5lp3C1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
B [auth C]	Amidohydro_1_N	e5lp3C2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)
A [auth B]	Isoaspartyl-dipeptidase	e5lp3B1	A: beta sandwiches	X: Composite domain of metallo-dependent hydrolases (From Topology)	H: Composite domain of metallo-dependent hydrolases (From Topology)	T: Composite domain of metallo-dependent hydrolases	F: Isoaspartyl-dipeptidase	ECOD (1.6)
A [auth B]	Amidohydro_1_N	e5lp3B2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Amidohydro_1_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	PF01979	Amidohydrolase family (Amidohydro_1)	Amidohydrolase family	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ...	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	Isoaspartyl dipeptidase	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds omega peptidase activity threonine-type peptidase activity beta-aspartyl-peptidase activity cation binding transition metal ion binding zinc ion binding ion binding binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds omega peptidase activity threonine-type peptidase activity beta-aspartyl-peptidase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	IPR006680	Amidohydrolase-related	Domain
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	IPR011059	Metal-dependent hydrolase, composite domain superfamily	Homologous Superfamily
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	IPR032466	Metal-dependent hydrolase	Homologous Superfamily
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	IPR010229	Peptidase M38, beta-aspartyl dipeptidase	Family
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	IPR033826	Isoaspartyl-dipeptidase	Family
A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], A [auth B], B [auth C], C [auth D], D [auth E], E [auth A], F, G, H, I, J, K, L	IPR050378	Metallo-dependent Hydrolases Superfamily	Family