5KVM | pdb_00005kvm

Extracellular region of mouse GPR56/ADGRG1 in complex with FN3 monobody


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyFull GAIN domain-like 8049576 4004608 SCOP2 (2022-06-29)
ASCOP2 FamilyPLL domain-like 8091404 4007736 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyZU5 domain-like 8091401 3002026 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPLL domain-like 8091405 3002504 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APLLe5kvmA1 A: alpha bundlesX: 4Fe-4S ferredoxinH: 4Fe-4S ferredoxinT: 4Fe-4S ferredoxinF: PLLECOD (develop294)
AGFO_IDH_MocAe5kvmA2 A: alpha bundlesX: 4Fe-4S ferredoxinH: 4Fe-4S ferredoxinT: 4Fe-4S ferredoxinF: GFO_IDH_MocAECOD (develop294)
CPPP2R1A-like_HEAT, VPS15-like_hele5kvmC1 A: alpha bundlesX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PPP2R1A-like_HEAT, VPS15-like_helECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18619GPCR-Autoproteolysis-INducing (GAIN) subdomain A (GAIN_A)GPCR-Autoproteolysis-INducing (GAIN) subdomain AGPR56 is a a cell-surface G protein-coupled receptor (GPCR) which belongs to the adhesion G protein-coupled receptor (aGPCR) family, a large family of chimeric proteins that have both adhesion and signaling functions and play critical roles in divers ...GPR56 is a a cell-surface G protein-coupled receptor (GPCR) which belongs to the adhesion G protein-coupled receptor (aGPCR) family, a large family of chimeric proteins that have both adhesion and signaling functions and play critical roles in diverse neurobiological processes including brain development, synaptogenesis, and myelination. This entry represents GPCR-Autoproteolysis-INducing (GAIN) subdomain A, including PLL-GAIN linker (F161-D175) region [1].
Domain
PF18587PTX/LNS-Like (PLL) domain (PLL)PTX/LNS-Like (PLL) domainAdhesion G protein-coupled receptors (aGPCRs) play critical roles in diverse neurobiological processes including brain development, synaptogenesis, and myelination. The aGPCR GPR56/ADGRG1 regulates both oligodendrocyte and cortical development. The N ...Adhesion G protein-coupled receptors (aGPCRs) play critical roles in diverse neurobiological processes including brain development, synaptogenesis, and myelination. The aGPCR GPR56/ADGRG1 regulates both oligodendrocyte and cortical development. The N-terminal domain of GPR56 has low sequence identity and a fold that likely diverged from the PTX and LNS domains. It also has a conserved motif (HphiC91xxWxxxxG) that was identified among canonical PTX domains. Thus, it is termed the Pentraxin/Laminin/neurexin/sex-hormone-binding-globulin-Like (PLL) domain. Truncation-based analyses suggest that the regions of GPR56 responsible for binding TG2 and collagen III are within the PLL domain, most likely in the surface-exposed conserved patch. Furthermore, it is suggested that the conserved patch of the PLL domain mediates an essential function in CNS myelination [1].
Domain
PF01825GPCR proteolysis site, GPS, motif (GPS)GPCR proteolysis site, GPS, motif- Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Adhesion G-protein coupled receptor G1
FN3 monobody alpha5---
Adhesion G-protein coupled receptor G1