5JPW | pdb_00005jpw

Molecular basis for protein recognition specificity of the DYNLT1/Tctex1 canonical binding groove. Characterization of the interaction with activin receptor IIB

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	DLC-like	8051841	3000821	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dynein intermediate chain-like	8051842	3002038	SCOP2B (2022-06-29)
A	SCOP2 Family	Tctex-1-like	8044666	4004068	SCOP2 (2022-06-29)
A	SCOP2 Family	Cytoplasmic dynein 1 IC2	8046596	4005181	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DLC-like	8051841	3000821	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dynein intermediate chain-like	8051842	3002038	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	7tm_1	e5jpwB1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: 7tm_1	ECOD (v294.1)
A	AMP-binding,ACAS_N	e5jpwA1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: AMP-binding,ACAS_N	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF11540	Cytoplasmic dynein 1 intermediate chain 2 (Dynein_IC2)	Cytoplasmic dynein 1 intermediate chain 2	-	Family
A, B	PF03645	Tctex-1 family (Tctex-1)	Tctex-1 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Dynein light chain Tctex-type 1,Cytoplasmic dynein 1 intermediate chain 2	protein binding binding dynein intermediate chain binding identical protein binding dynein heavy chain binding dynein light chain binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity	regulation of biological process establishment of protein localization biological process involved in interspecies interaction between organisms transport biological regulation establishment of localization biological process involved in interaction with host biological process involved in symbiotic interaction localization regulation of viral process regulation by virus of viral protein levels in host cell intracellular transport of viral protein in host cell protein transport symbiont intracellular protein transport in host macromolecule localization regulation of biological process establishment of protein localization biological process involved in interspecies interaction between organisms transport biological regulation establishment of localization biological process involved in interaction with host biological process involved in symbiotic interaction localization regulation of viral process regulation by virus of viral protein levels in host cell intracellular transport of viral protein in host cell protein transport symbiont intracellular protein transport in host macromolecule localization viral process regulation of biological quality intracellular protein localization microtubule-based movement microtubule-based process cellular process establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle cellular component organization or biogenesis microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation cytoskeleton organization regulation of localization regulation of cellular process regulation of transport positive regulation of biological process intracellular transport positive regulation of transport regulation of cellular localization positive regulation of intracellular transport positive regulation of cellular process regulation of intracellular transport cellular response to stimulus regulation of signaling response to stimulus signaling regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway signal transduction regulation of G protein-coupled receptor signaling pathway developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cell division symbiont entry into host cell symbiont entry into host viral life cycle microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus transport of virus transport of viral material towards nucleus regulation of developmental process cellular developmental process negative regulation of biological process cell development regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development negative regulation of neurogenesis neurogenesis cell differentiation negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of developmental process negative regulation of cell development negative regulation of multicellular organismal process microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport	host cellular component cellular anatomical structure host cell other organism part membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system extracellular region intracellular vesicle host cellular component cellular anatomical structure host cell other organism part membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system extracellular region intracellular vesicle cytoplasmic vesicle secretory vesicle vesicle vesicle lumen membrane-enclosed lumen cytoplasmic vesicle lumen secretory granule lumen intracellular organelle lumen organelle lumen secretory granule cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton polymeric cytoskeletal fiber cytoplasmic microtubule supramolecular fiber microtubule supramolecular polymer supramolecular complex protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex ficolin-1-rich granule ficolin-1-rich granule lumen centrosome microtubule organizing center cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR038586	Tctex-1-like superfamily	Homologous Superfamily
A, B	IPR005334	Dynein light chain Tctex-1-like	Family
A, B	IPR025956	Cytoplasmic dynein 1 intermediate chain 1/2	Family
A, B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR001680	WD40 repeat	Repeat
A, B	IPR050687	Dynein axonemal intermediate chain 1/2/3/4	Family
A, B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q13409	psoriasis astrocytic tumor dermatomyositis glioblastoma malignant glioma oligodendroglioma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor diabetes mellitus juvenile dermatomyositis malignant pancreatic neoplasm open-angle glaucoma pancreatic ductal adenocarcinoma psoriasis astrocytic tumor dermatomyositis glioblastoma malignant glioma oligodendroglioma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor diabetes mellitus juvenile dermatomyositis malignant pancreatic neoplasm open-angle glaucoma pancreatic ductal adenocarcinoma primitive neuroectodermal tumor cutaneous lupus erythematosus ductal breast carcinoma in situ malignant ependymoma medulloblastoma osteosarcoma pilocytic astrocytoma Beckwith-Wiedemann syndrome

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.