5JM8 | pdb_00005jm8

The structure of ATP-bound aerobactin synthetase IucA from a hypervirulent pathotype of Klebsiella pneumoniae

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	RhbC_1	e5jm8H2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
H	RhbC_1,IucA_IucC	e5jm8H1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: RhbC_1,IucA_IucC	ECOD (1.6)
G	RhbC_1	e5jm8G2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
G	IucA_IucC	e5jm8G1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: IucA_IucC	ECOD (1.6)
F	RhbC_1	e5jm8F2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
F	IucA_IucC	e5jm8F1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: IucA_IucC	ECOD (1.6)
E	RhbC_1	e5jm8E2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
E	IucA_IucC	e5jm8E1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: IucA_IucC	ECOD (1.6)
D	RhbC_1	e5jm8D2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
D	IucA_IucC	e5jm8D1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: IucA_IucC	ECOD (1.6)
C	RhbC_1	e5jm8C2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
C	IucA_IucC	e5jm8C1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: IucA_IucC	ECOD (1.6)
B	RhbC_1	e5jm8B2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
B	IucA_IucC	e5jm8B1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: IucA_IucC	ECOD (1.6)
A	RhbC_1	e5jm8A2	A: a+b two layers	X: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	H: N-terminal domain of alcaligin biosynthesis protein C (From Topology)	T: N-terminal domain of alcaligin biosynthesis protein C	F: RhbC_1	ECOD (1.6)
A	IucA_IucC	e5jm8A1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: IucA_IucC	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF04183	IucA / IucC family (IucA_IucC)	IucA / IucC family	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H	PF06276	Ferric iron reductase FhuF-like transporter (FhuF)	Ferric iron reductase FhuF-like transporter	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Aerobactin synthase IucA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding acid-amino acid ligase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity cation binding metal ion binding	siderophore biosynthetic process peptide biosynthetic process biosynthetic process secondary metabolite biosynthetic process siderophore metabolic process metabolic process cellular process nonribosomal peptide biosynthetic process peptide metabolic process secondary metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022770	Aerobactin siderophore biosynthesis IucA/IucC-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR037455	Aerobactin siderophore biosynthesis, IucA/IucC-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR007310	Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.