5JGH | pdb_00005jgh

Crystal structure of the mitochondrial DNA packaging protein Abf2p in complex with DNA at 2.6 Angstrom resolution

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
JORC4_Ce5jghJ1 A: a/b three-layered sandwichesX: Mog1p/PsbP-likeH: EGF-relatedT: TNF receptor-likeF: ORC4_CECOD (v294.1)
GORC4_Ce5jghG1 A: a/b three-layered sandwichesX: Mog1p/PsbP-likeH: EGF-relatedT: TNF receptor-likeF: ORC4_CECOD (v294.1)
DORC4_Ce5jghD1 A: a/b three-layered sandwichesX: Mog1p/PsbP-likeH: EGF-relatedT: TNF receptor-likeF: ORC4_CECOD (v294.1)
AORC4_Ce5jghA1 A: a/b three-layered sandwichesX: Mog1p/PsbP-likeH: EGF-relatedT: TNF receptor-likeF: ORC4_CECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D, G, J
PF00505HMG (high mobility group) box (HMG_box)HMG (high mobility group) boxDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F, I, L
DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*AP*AP*TP*AP*AP*TP*AP*AP*A)-3')---
B, E, H, K
DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*A)-3')---
A, D, G, J
ARS-binding factor 2, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, D, G, J
IPR051965Chromatin Regulation and Neuronal Gene ExpressionFamily
A, D, G, J
IPR009071High mobility group box domainDomain
A, D, G, J
IPR036910High mobility group box domain superfamilyHomologous Superfamily