5J5V
CdiA-CT from uropathogenic Escherichia coli in complex with cognate immunity protein and CysK
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5j5va_ | Alpha and beta proteins (a/b) | Tryptophan synthase beta subunit-like PLP-dependent enzymes | Tryptophan synthase beta subunit-like PLP-dependent enzymes | Tryptophan synthase beta subunit-like PLP-dependent enzymes | automated matches | (Escherichia coli O157:H7 ) [TaxId: 83334 ], | SCOPe (2.08) |
D | d5j5vd_ | Alpha and beta proteins (a/b) | Tryptophan synthase beta subunit-like PLP-dependent enzymes | Tryptophan synthase beta subunit-like PLP-dependent enzymes | Tryptophan synthase beta subunit-like PLP-dependent enzymes | automated matches | (Escherichia coli O157:H7 ) [TaxId: 83334 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PALP | e5j5vA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Tryptophan synthase beta subunit-like PLP-dependent enzymes (From Topology) | T: Tryptophan synthase beta subunit-like PLP-dependent enzymes | F: PALP | ECOD (1.6) |
D | PALP | e5j5vD2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Tryptophan synthase beta subunit-like PLP-dependent enzymes (From Topology) | T: Tryptophan synthase beta subunit-like PLP-dependent enzymes | F: PALP | ECOD (1.6) |
B | Ntox28 | e5j5vB1 | A: alpha arrays | X: CdiA C-terminal nuclease domain (From Topology) | H: CdiA C-terminal nuclease domain (From Topology) | T: CdiA C-terminal nuclease domain | F: Ntox28 | ECOD (1.6) |
E | Ntox28 | e5j5vE1 | A: alpha arrays | X: CdiA C-terminal nuclease domain (From Topology) | H: CdiA C-terminal nuclease domain (From Topology) | T: CdiA C-terminal nuclease domain | F: Ntox28 | ECOD (1.6) |
C | EUF08234 | e5j5vC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Immunity protein CdiI (From Topology) | T: Immunity protein CdiI | F: EUF08234 | ECOD (1.6) |
F | EUF08234 | e5j5vF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Immunity protein CdiI (From Topology) | T: Immunity protein CdiI | F: EUF08234 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1100 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
D | 3.40.50.1100 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00291 | Pyridoxal-phosphate dependent enzyme (PALP) | Pyridoxal-phosphate dependent enzyme | - | Family | |
PF18616 | CDI immunity proteins (CdiI_3) | CDI immunity proteins | Contact-dependent growth inhibition (CDI) is a widespread mechanism of bacterial competition. CDI+ bacteria deliver the toxic C-terminal region of contact-dependent inhibition A proteins (CdiA-CT) into neighboring target bacteria and produce CDI immu ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005856 | Cysteine synthase | Family | |
IPR005859 | Cysteine synthase CysK | Family | |
IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | Homologous Superfamily | |
IPR001926 | Tryptophan synthase beta chain-like, PALP domain | Domain | |
IPR050214 | Cysteine Synthase/Cystathionine Beta-Synthase | Family | |
IPR001216 | Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site | Binding Site | |
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR006914 | VENN motif-containing domain | Domain | |
IPR028948 | Bacterial toxin 28 | Domain | |
IPR006626 | Parallel beta-helix repeat | Repeat | |
IPR008638 | Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain | Domain | |
IPR025157 | Hemagglutinin repeat | Repeat | |
IPR010069 | Toxin CdiA-like, Filamentous hemagglutinin motif repeats | Repeat | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily | |
IPR040547 | Immunity protein CdiI | Family |