Annotations: 5J5V

CdiA-CT from uropathogenic Escherichia coli in complex with cognate immunity protein and CysK

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5j5vd_	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)
A	d5j5va_	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	(Escherichia coli O157:H7 ) [TaxId: 83334 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Metallophos	e5j5vF1	A: alpha arrays	X: HTH	H: Metallo-dependent phosphatases	T: Metallo-dependent phosphatases	F: Metallophos	ECOD (v295.2)
C	Acetyltransf_3	e5j5vC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Acetyltransf_3	ECOD (v295.2)
E	Acetyltransf_3	e5j5vE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Acetyltransf_3	ECOD (v295.2)
B	Acetyltransf_3	e5j5vB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Acetyltransf_3	ECOD (v295.2)
D	WD40	e5j5vD1	A: alpha arrays	X: jelly-roll	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v295.2)
A	WD40	e5j5vA1	A: alpha arrays	X: jelly-roll	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	Immunity protein CdiI	-	-	-
B, E	tRNA nuclease CdiA	endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity tRNA-specific ribonuclease activity catalytic activity, acting on a tRNA	-	cellular anatomical structure extracellular region host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region other organism part
A, D	Cysteine synthase A	lyase activity catalytic activity cysteine synthase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR040547	Immunity protein CdiI	Family
B, E	IPR006626	Parallel beta-helix repeat	Repeat
B, E	IPR008638	Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain	Domain
B, E	IPR012334	Pectin lyase fold	Homologous Superfamily
B, E	IPR028948	tRNA nuclease CdiA, C-terminal domain	Domain
B, E	IPR006914	VENN motif-containing domain	Domain
B, E	IPR025157	Hemagglutinin repeat	Repeat
B, E	IPR010069	Toxin CdiA-like, Filamentous hemagglutinin motif repeats	Repeat
B, E	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily
A, D	IPR005856	Cysteine synthase	Family
A, D	IPR005859	Cysteine synthase CysK	Family
A, D	IPR036052	Tryptophan synthase beta chain-like, PALP domain superfamily	Homologous Superfamily
A, D	IPR001926	Tryptophan synthase beta chain-like, PALP domain	Domain
A, D	IPR001216	Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site	Binding Site
A, D	IPR050214	Cysteine synthase/Cystathionine beta-synthase	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C, F	MSE	Parent Component: MET
B, E	MSE	Parent Component: MET
A, D	LLP	Parent Component: LYS : AA0119 : N6-pyridoxal phosphate-L-lysine MOD:00128