5IPK | pdb_00005ipk

Structure of the R432A variant of Adeno-associated virus type 2 VLP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth z]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XA [auth x]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WA [auth w]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FB [auth 6]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EB [auth 5]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DB [auth 4]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CB [auth 3]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BB [auth 2]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AB [auth 1]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth z]TGSe5ipkz1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
ZTGSe5ipkZ1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
YA [auth y]TGSe5ipky1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
YTGSe5ipkY1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
XA [auth x]TGSe5ipkx1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
XTGSe5ipkX1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
WA [auth w]TGSe5ipkw1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
WTGSe5ipkW1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
VA [auth v]TGSe5ipkv1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
VTGSe5ipkV1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
UA [auth u]TGSe5ipku1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
UTGSe5ipkU1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
TA [auth t]TGSe5ipkt1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
TTGSe5ipkT1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
SA [auth s]TGSe5ipks1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
STGSe5ipkS1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
RA [auth r]TGSe5ipkr1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
RTGSe5ipkR1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
QA [auth q]TGSe5ipkq1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
QTGSe5ipkQ1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
PA [auth p]TGSe5ipkp1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
PTGSe5ipkP1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
OA [auth o]TGSe5ipko1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
OTGSe5ipkO1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
NA [auth n]TGSe5ipkn1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
NTGSe5ipkN1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
MA [auth m]TGSe5ipkm1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
MTGSe5ipkM1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
LA [auth l]TGSe5ipkl1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
LTGSe5ipkL1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
KA [auth k]TGSe5ipkk1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
KTGSe5ipkK1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
JA [auth j]TGSe5ipkj1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
JTGSe5ipkJ1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
IA [auth i]TGSe5ipki1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
ITGSe5ipkI1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
HB [auth 8]TGSe5ipk81 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
HA [auth h]TGSe5ipkh1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
HTGSe5ipkH1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
GB [auth 7]TGSe5ipk71 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
GA [auth g]TGSe5ipkg1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
GTGSe5ipkG1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
FB [auth 6]TGSe5ipk61 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
FA [auth f]TGSe5ipkf1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
FTGSe5ipkF1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
EB [auth 5]TGSe5ipk51 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
EA [auth e]TGSe5ipke1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
ETGSe5ipkE1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
DB [auth 4]TGSe5ipk41 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
DA [auth d]TGSe5ipkd1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
DTGSe5ipkD1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
CB [auth 3]TGSe5ipk31 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
CA [auth c]TGSe5ipkc1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
CTGSe5ipkC1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
BB [auth 2]TGSe5ipk21 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
BA [auth b]TGSe5ipkb1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
BTGSe5ipkB1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
AB [auth 1]TGSe5ipk11 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
AA [auth a]TGSe5ipka1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)
ATGSe5ipkA1 A: a/b three-layered sandwichesX: Rossmann-likeH: RIFT-relatedT: acid proteaseF: TGSECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily