5ID6 | pdb_00005id6

Structure of Cpf1/RNA Complex

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5id6a4 All alpha proteins Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a3 All beta proteins Small protein B (SmpB) Oligonucleotide-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Oligonucleotide-binding domain from CRISPR-associated protein Cas12a / Cpf1 Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like RuvC-like domain from CRISPR-associated protein Cas12a / Cpf1 Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a2 Alpha and beta proteins (a+b) NUC domain from CRISPR-associated protein Cas12a / Cpf1-like NUC domain from CRISPR-associated protein Cas12a / Cpf1-like NUC domain from CRISPR-associated protein Cas12a / Cpf1 Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a5 Multi-domain proteins (alpha and beta) N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Acas_Cpf1_4the5id6A1 A: beta barrelsX: OB-foldH: Small protein B (SmpB) (From Topology)T: Small protein B (SmpB)F: cas_Cpf1_4thECOD (1.6)
Acas_Cpf1_3rde5id6A2 A: alpha arraysX: CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain (From Topology)H: CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain (From Topology)T: CRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domainF: cas_Cpf1_3rdECOD (1.6)
Acas_Cpf1_1ste5id6A5 A: alpha complex topologyX: CRISPR-associated endonuclease first helical domainH: CRISPR-associated endonuclease Cpf1 first helical domain (From Topology)T: CRISPR-associated endonuclease Cpf1 first helical domainF: cas_Cpf1_1stECOD (1.6)
Acas_Cpf1_2nde5id6A6 A: alpha complex topologyX: CRISPR-associated endonuclease Cpf1 second helical domain (From Topology)H: CRISPR-associated endonuclease Cpf1 second helical domain (From Topology)T: CRISPR-associated endonuclease Cpf1 second helical domainF: cas_Cpf1_2ndECOD (1.6)
Acas_Cpf1_5the5id6A3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: cas_Cpf1_5thECOD (1.6)
Acas_Cpf1_6the5id6A4 A: few secondary structure elementsX: CRISPR-associated endonuclease Cpf1 nuclease domain (From Topology)H: CRISPR-associated endonuclease Cpf1 nuclease domain (From Topology)T: CRISPR-associated endonuclease Cpf1 nuclease domainF: cas_Cpf1_6thECOD (1.6)