5HBU | pdb_00005hbu

Structure of the E. coli nucleoid occlusion protein SlmA bound to DNA and the C-terminal tail of the cytoskeletal cell division protein FtsZ

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Asp_Arg_Hydrox	e5hbuH1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)
G	Asp_Arg_Hydrox	e5hbuG1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)
F	Asp_Arg_Hydrox	e5hbuF1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)
E	Asp_Arg_Hydrox	e5hbuE1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)
D	Asp_Arg_Hydrox	e5hbuD1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)
C	Asp_Arg_Hydrox	e5hbuC1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)
B	Asp_Arg_Hydrox	e5hbuB1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)
A	Asp_Arg_Hydrox	e5hbuA1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Asp_Arg_Hydrox	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
G	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
F	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
E	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
D	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
C	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
B	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
A	1.10.357.10	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF22276	Tetracyclin repressor-like, C-terminal domain (SlmA-like_C)	Tetracyclin repressor-like, C-terminal domain	This domain is found at the C-terminal end of Nucleoid occlusion factor SlmA from Escherichia coli and similar transcriptional repressors from proteobacteria. SlmA is required for the nucleoid occlusion (NO) phenomenon, which prevents Z-ring formatio ...	This domain is found at the C-terminal end of Nucleoid occlusion factor SlmA from Escherichia coli and similar transcriptional repressors from proteobacteria. SlmA is required for the nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. It is organised into two domains, a small N-terminal Pfam:PF00440 and a C-terminal domain (this entry). This domain shows an all-alpha configuration. This region mediates dimerisation [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF00440	Bacterial regulatory proteins, tetR family (TetR_N)	Bacterial regulatory proteins, tetR family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth K]	FtsZ CTT peptide	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding protein binding	cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell septum assembly cytokinesis cytokinetic process division septum assembly cell cycle cell division cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell septum assembly cytokinesis cytokinetic process division septum assembly cell cycle cell division cell cycle process reproductive process in single-celled organism reproductive process FtsZ-dependent cytokinesis asexual reproduction	cell division site cellular anatomical structure cell periphery plasma membrane membrane intracellular anatomical structure cytoplasm protein-containing complex divisome complex cell septum
I [auth W], J [auth Z], K [auth R], L [auth T]	DNA (5'-D(GPTPGPAPGPTPAPCPTPCPAPC)-3')	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H	Nucleoid occlusion factor SlmA	DNA binding binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum site selection cellular process division septum assembly cell cycle cell division cellular component organization or biogenesis cell cycle process regulation of cellular process cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum site selection cellular process division septum assembly cell cycle cell division cellular component organization or biogenesis cell cycle process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process regulation of cellular component organization negative regulation of cell septum assembly negative regulation of biological process negative regulation of cell cycle regulation of cell division negative regulation of division septum assembly negative regulation of cellular process regulation of cell cycle regulation of cytokinesis regulation of division septum assembly negative regulation of cytokinesis negative regulation of cellular component organization regulation of cell cycle process regulation of cytokinetic process regulation of cellular component biogenesis negative regulation of cell cycle process regulation of cell septum assembly negative regulation of cell division protein polymerization protein-containing complex organization negative regulation of protein-containing complex assembly regulation of protein-containing complex assembly regulation of protein polymerization protein-containing complex assembly negative regulation of protein polymerization	intracellular organelle bacterial nucleoid cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle nucleoid cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
M [auth K]	IPR020805	Cell division protein FtsZ, conserved site	Conserved Site
M [auth K]	IPR024757	Cell division protein FtsZ, C-terminal	Domain
M [auth K]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
M [auth K]	IPR045061	Tubulin-like protein FtsZ/CetZ	Family
M [auth K]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
M [auth K]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
M [auth K]	IPR000158	Cell division protein FtsZ	Family
M [auth K]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
M [auth K]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023769	Nucleoid occlusion factor SlmA	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001647	DNA-binding HTH domain, TetR-type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023772	DNA-binding HTH domain, TetR-type, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR054580	Nucleoid occlusion factor SlmA-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050109	HTH-type, TetR-like transcriptional regulator	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.