5H3K | pdb_00005h3k

Crystal structure of a hypothetical protein from Synechocystis

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySlr0280 NAGPA domain-like 8092193 4007765 SCOP2 (2022-06-29)
ASCOP2 FamilySlr0280 N-terminal domain-like 8092196 4007766 SCOP2 (2022-06-29)
ASCOP2 FamilyAMIN domain-like 8092198 4005368 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNAGPA-like 8092195 3002564 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFimD/Slr0280 N-terminal domain-like 8092197 3001001 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAMIN domain-like 8092199 3002568 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySMc00288-like 8092194 3002567 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae5h3kA1 A: alpha arraysX: VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptorH: Laminaripentaose-producing beta-1,3-glucanase insertion domainT: Laminaripentaose-producing beta-1,3-glucanase insertion domainF:ECOD (v295.2)
Ae5h3kA2 A: alpha arraysX: VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptorH: Laminaripentaose-producing beta-1,3-glucanase insertion domainT: Laminaripentaose-producing beta-1,3-glucanase insertion domainF:ECOD (v295.2)
ANAGPAe5h3kA3 A: alpha arraysX: VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptorH: Laminaripentaose-producing beta-1,3-glucanase insertion domainT: Laminaripentaose-producing beta-1,3-glucanase insertion domainF: NAGPAECOD (v295.2)
AGlyco_hydro_64e5h3kA7 A: alpha arraysX: VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptorH: Laminaripentaose-producing beta-1,3-glucanase insertion domainT: Laminaripentaose-producing beta-1,3-glucanase insertion domainF: Glyco_hydro_64ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09992Phosphodiester glycosidase (NAGPA)Phosphodiester glycosidaseThis is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallised and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphod ...This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallised and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase [1]. The human protein is also present, so the eukaryotic members are likely to be catalysing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides [2].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018711Phosphodiester glycosidaseDomain