5GW9 | pdb_00005gw9

Crystal structure of C163, a backbone circularized G-CSF

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5gw9d_	All alpha proteins	4-helical cytokines	4-helical cytokines	Long-chain cytokines	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d5gw9c_	All alpha proteins	4-helical cytokines	4-helical cytokines	Long-chain cytokines	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5gw9b_	All alpha proteins	4-helical cytokines	4-helical cytokines	Long-chain cytokines	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d5gw9a_	All alpha proteins	4-helical cytokines	4-helical cytokines	Long-chain cytokines	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	4-helical cytokines	8037058	3001717	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	4-helical cytokines	8037058	3001717	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	4-helical cytokines	8037058	3001717	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	4-helical cytokines	8037058	3001717	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ldl_recept_a	e5gw9D1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Ldl_recept_a	ECOD (v294.1)
C	Ldl_recept_a	e5gw9C1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Ldl_recept_a	ECOD (v294.1)
B	Ldl_recept_a	e5gw9B1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Ldl_recept_a	ECOD (v294.1)
A	Ldl_recept_a	e5gw9A1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Ldl_recept_a	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.1250.10	Mainly Alpha	Up-down Bundle	Growth Hormone	Chain: A	CATH (4.3.0)
C	1.20.1250.10	Mainly Alpha	Up-down Bundle	Growth Hormone	Chain: A	CATH (4.3.0)
B	1.20.1250.10	Mainly Alpha	Up-down Bundle	Growth Hormone	Chain: A	CATH (4.3.0)
A	1.20.1250.10	Mainly Alpha	Up-down Bundle	Growth Hormone	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16647	Granulocyte colony-stimulating factor (GCSF)	Granulocyte colony-stimulating factor	GCSF is a family of higher eukaryotic granulocyte colony-stimulating factor proteins. Granulocyte colony-stimulating factors are cytokines that are involved in haematopoeisis. They control the production, differentiation and function of white blood ...	GCSF is a family of higher eukaryotic granulocyte colony-stimulating factor proteins. Granulocyte colony-stimulating factors are cytokines that are involved in haematopoeisis. They control the production, differentiation and function of white blood cell granulocytes. GCSF binds to the extracellular Ig-like and CRH domain of its receptor GCSFR, thereby triggering the receptor to homodimerise [1]. Homodimerisation result in activation of Janus tyrosine kinase-signal transducers and other activators of transcription (JAK-STAT)-type signalling cascades [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Granulocyte colony-stimulating factor	molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity cytokine activity protein binding binding signaling receptor binding cytokine receptor binding granulocyte colony-stimulating factor receptor binding growth factor receptor binding enzyme binding	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide response to chemical cellular process cellular response to cytokine stimulus cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide response to chemical cellular process cellular response to cytokine stimulus signal transduction immune response immune system process developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis cell development granulocyte differentiation myeloid cell differentiation cell differentiation anatomical structure development leukocyte differentiation multicellular organismal process regulation of developmental process positive regulation of biological process regulation of cell differentiation regulation of cell development positive regulation of developmental process multicellular organism development positive regulation of cell differentiation regulation of immune system process regulation of multicellular organismal process positive regulation of cellular process regulation of multicellular organismal development regulation of myeloid cell differentiation positive regulation of myeloid cell differentiation regulation of hemopoiesis biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin granulocyte colony-stimulating factor signaling pathway regulation of cytoskeleton organization regulation of actin filament organization regulation of cellular component organization regulation of actin filament-based process actin cytoskeleton organization actin filament organization regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process regulation of supramolecular fiber organization cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization positive regulation of cell communication regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of response to stimulus regulation of cell communication phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of signaling response to alcohol response to ethanol cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation positive regulation of organelle organization positive regulation of cellular component organization regulation of cellular component size cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly cellular component assembly positive regulation of protein polymerization protein-containing complex assembly regulation of actin filament polymerization regulation of biological quality protein polymerization actin polymerization or depolymerization actin filament polymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of actin polymerization or depolymerization regulation of cellular component biogenesis positive regulation of supramolecular fiber organization regulation of protein polymerization regulation of actin filament length positive regulation of actin filament polymerization regulation of anatomical structure size positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle cytoplasm membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen lytic vacuole vacuolar lumen vacuole intracellular membrane-bounded organelle lysosomal lumen intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle cytoplasm lysosome extracellular region intracellular vesicle cytoplasmic vesicle endocytic vesicle lumen vesicle endocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR030473	Interleukin-6/GCSF/MGF, conserved site	Conserved Site
A, B, C, D	IPR009079	Four-helical cytokine-like, core	Homologous Superfamily
A, B, C, D	IPR040117	GCSF/MGF	Family
A, B, C, D	IPR030474	Interleukin-6/GCSF/MGF	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P09919	neutropenia thrombocytopenia non-small cell lung carcinoma aplastic anemia localized scleroderma pancytopenia acute myeloid leukemia plasma cell myeloma leiomyosarcoma Stevens-Johnson syndrome agranulocytosis anemia transitional cell carcinoma melanoma leukopenia neutropenia thrombocytopenia non-small cell lung carcinoma aplastic anemia localized scleroderma pancytopenia acute myeloid leukemia plasma cell myeloma leiomyosarcoma Stevens-Johnson syndrome agranulocytosis anemia transitional cell carcinoma melanoma leukopenia myopathy angiosarcoma dilated cardiomyopathy bone marrow neoplasm scleroderma uterine cancer Hodgkins lymphoma Hypertrophy breast carcinoma skin neoplasm esophageal cancer carcinoma small cell lung carcinoma acute liver failure stomatitis liver disease myxoid leiomyosarcoma pulmonary fibrosis nervous system disorder urinary bladder cancer endogenous depression melancholia peripheral nervous system disease congestive heart failure heart disease poisoning liver cancer B-cell neoplasm sarcomatoid carcinoma skin cancer epithelioid leiomyosarcoma gastrointestinal mucositis peripheral neuropathy kidney disease head and neck cancer hepatic veno-occlusive disease diarrheal disease benign connective and soft tissue neoplasm disease susceptibility Hodgkin's lymphoma, lymphocytic-histiocytic predominance osteosarcoma brain injury staphylococcus aureus infection head and neck neoplasm pneumonia linear scleroderma cutaneous melanoma myeloid neoplasm toxic epidermal necrolysis neoplasm of neck lung cancer dilated cardiomyopathy 1A undifferentiated carcinoma nodular lymphocyte predominant Hodgkin lymphoma sarcoidosis Hodgkin's lymphoma, mixed cellularity drug-induced liver injury Huntington disease lymphopenia cancer small cell carcinoma malignant tumor of neck invasive ductal breast carcinoma staphylococcal infection adult acute respiratory distress syndrome muscular disease digestive system disease reticulum cell sarcoma lymphatic system disease neurotic disorder non-Hodgkin lymphoma Hodgkin's lymphoma, lymphocytic depletion bone marrow disease urinary bladder neoplasm hyperbilirubinemia breast cancer lymphosarcoma idiopathic interstitial pneumonia periodontitis chronic obstructive pulmonary disease muscle tissue disease plasma cell neoplasm COVID-19 heart failure allergic rhinitis depressive disorder systemic sclerosis psoriasis liver neoplasm neoplasm of esophagus hereditary hyperbilirubinemia autoimmune disease lung adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.