5FTT | pdb_00005ftt

Octameric complex of Latrophilin 3 (Lec, Olf) , Unc5D (Ig, Ig2, TSP1) and FLRT2 (LRR)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Olfactomedin-like	8052986	3002154	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sea urchin egg lectin (SUEL)-like	8053003	3002155	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Olfactomedin-like	8052986	3002154	SCOP2B (2022-06-29)
G	SCOP2 Family	Sea urchin egg lectin (SUEL)-like	8049899	4006685	SCOP2 (2022-06-29)
G	SCOP2 Family	Olfactomedin-like	8049981	4006715	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	Sea urchin egg lectin (SUEL)-like	8053003	3002155	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	Olfactomedin-like	8052986	3002154	SCOP2 (2022-06-29)
H	SCOP2B Superfamily	Olfactomedin-like	8052986	3002154	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PDZ_2	e5fttA1	A: alpha bundles	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (develop294)
E	PDZ_2	e5fttE1	A: alpha bundles	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (develop294)
B	PDZ_2	e5fttB1	A: alpha bundles	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (develop294)
F	PDZ_2	e5fttF1	A: alpha bundles	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (develop294)
C	PDZ_2	e5fttC1	A: alpha bundles	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (develop294)
D	LptE	e5fttD1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: LptE	ECOD (develop294)
G	PDZ_2	e5fttG1	A: alpha bundles	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (develop294)
H	PDZ_2	e5fttH1	A: alpha bundles	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
F	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
C	2.60.120.740	Mainly Beta	Sandwich	Jelly Rolls	Rhamnose-binding lectin domain (RBL)	CATH (4.3.0)
G	2.60.120.740	Mainly Beta	Sandwich	Jelly Rolls	Rhamnose-binding lectin domain (RBL)	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A, E	Netrin receptor UNC5D	1F-DOMAIN-1C-LIKE	Rattus norvegicus (Norway rat)	UNC5D*01	F-LIKE-DOMAIN F-DOMAIN, C-LIKE-DOMAIN C-LIKE	RPI	1F-DOMAIN-1C-LIKE	IMGT (202610-0)
B, F	FLRT2 (Leucine-rich repeat transmembrane protein)	FLRT2	Mus musculus (house mouse)	FLRT2*01	R-LIKE-DOMAIN LRRNT, R-LIKE-DOMAIN LRR1, R-LIKE-DOMAIN LRR2, R-LIKE-DOMAIN LRR3, R-LIKE-DOMAIN LRR4, R-LIKE-DOMAIN LRR5, R-LIKE-DOMAIN LRR6, R-LIKE-DOMAIN LRR7, R-LIKE-DOMAIN LRR8, R-LIKE-DOMAIN LRR9, R-LIKE-DOMAIN LRR10, R-LIKE-DOMAIN LRRCT	RPI	FLRT2	IMGT (202610-0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, E	PF00090	Thrombospondin type 1 domain (TSP_1)	Thrombospondin type 1 domain		Domain
A, E	PF07679	Immunoglobulin I-set domain (I-set)	Immunoglobulin I-set domain		Domain
A, E	PF25609	Netrin receptor unc-5 N-terminal domain (Unc5_NetrinR_N)	Netrin receptor unc-5 N-terminal domain	This entry represents the N-terminal Ig-like domain of unc-5 family members. The unc-5 family consists of netrin receptors that play a crucial role in axon guidance and neuronal development. These receptors mediate axon repulsion of neuronal growth c ...	This entry represents the N-terminal Ig-like domain of unc-5 family members. The unc-5 family consists of netrin receptors that play a crucial role in axon guidance and neuronal development. These receptors mediate axon repulsion of neuronal growth cones in the developing nervous system upon binding with netrin ligands. They are involved in various processes such as cell-cell adhesion, cell migration, and apoptosis. The family members also function as dependence receptors, inducing apoptosis when not associated with netrin ligands. Some members are involved in vascular branching regulation during angiogenesis and interact with other proteins like DCC and FLRTs to modulate their functions. The unc-5 family is essential for proper neuronal network formation and maintenance.	Domain
B, F	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat
B, F	PF01463	Leucine rich repeat C-terminal domain (LRRCT)	Leucine rich repeat C-terminal domain	-	Family
C, D, G, H	PF02191	Olfactomedin-like domain (OLF)	Olfactomedin-like domain		Domain
C, D, G, H	PF02140	D-galactoside/L-rhamnose binding SUEL lectin domain (SUEL_Lectin)	D-galactoside/L-rhamnose binding SUEL lectin domain	The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [1]. The sea urchin egg lectin (SUEL) forms ...	The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [1]. The sea urchin egg lectin (SUEL) forms a new class of lectins that binds D-galactoside and L-rhamnose, with preference for L-rhamnose [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E	NETRIN RECEPTOR UNC5D	molecular transducer activity transmembrane signaling receptor activity signaling receptor activity netrin receptor activity	multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development cellular process central nervous system neuron differentiation central nervous system development pyramidal neuron differentiation apoptotic process cell death programmed cell death regulation of biological process regulation of cell motility regulation of cellular process neuron migration biological regulation regulation of neuron migration regulation of locomotion regulation of cell migration cell migration cell motility locomotion	cell surface cellular anatomical structure cell periphery plasma membrane membrane
B, F	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT2	protein binding binding signaling receptor binding fibroblast growth factor receptor binding growth factor receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity chemorepellent activity receptor ligand activity signaling receptor activator activity	developmental process heart development multicellular organismal process heart morphogenesis animal organ development cell adhesion involved in heart morphogenesis circulatory system development multicellular organism development anatomical structure morphogenesis cell adhesion anatomical structure development animal organ morphogenesis cellular process system development developmental process heart development multicellular organismal process heart morphogenesis animal organ development cell adhesion involved in heart morphogenesis circulatory system development multicellular organism development anatomical structure morphogenesis cell adhesion anatomical structure development animal organ morphogenesis cellular process system development positive regulation of nervous system development regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component organization cellular component biogenesis cellular component assembly cell junction assembly regulation of multicellular organismal process regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality positive regulation of cellular process regulation of multicellular organismal development regulation of biological process positive regulation of cellular component biogenesis biological regulation nervous system development regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization cell junction organization positive regulation of multicellular organismal process synapse assembly positive regulation of synapse assembly regulation of cell motility neuron migration cellular developmental process regulation of neuron migration generation of neurons neurogenesis cell differentiation regulation of locomotion regulation of cell migration cell migration cell motility locomotion extracellular matrix organization basement membrane organization extracellular structure organization external encapsulating structure organization response to fibroblast growth factor cellular response to stimulus cellular response to growth factor stimulus response to stimulus cell surface receptor signaling pathway signaling response to endogenous stimulus cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular response to endogenous stimulus fibroblast growth factor receptor signaling pathway response to growth factor signal transduction cellular response to fibroblast growth factor stimulus enzyme-linked receptor protein signaling pathway regulation of postsynapse assembly postsynapse organization postsynapse assembly regulation of postsynapse organization axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis plasma membrane bounded cell projection organization axon guidance axon development cell morphogenesis involved in neuron differentiation neuron projection guidance neuron development	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction presynapse presynaptic membrane glutamatergic synapse membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane cell projection neuron projection plasma membrane bounded cell projection extracellular region extracellular space
C, D, G, H	ADHESION G PROTEIN-COUPLED RECEPTOR L3	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding protein binding cell adhesion mediator activity carbohydrate binding	developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis developmental process multicellular organismal process nervous system development excitatory synapse assembly cellular component organization cellular component biogenesis multicellular organism development cell junction organization cellular component assembly cell junction assembly anatomical structure development cellular process synapse organization cellular component organization or biogenesis synapse assembly system development positive regulation of nervous system development regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process regulation of multicellular organismal process regulation of synapse structure or activity regulation of synapse assembly regulation of biological quality positive regulation of cellular process regulation of multicellular organismal development regulation of biological process positive regulation of cellular component biogenesis biological regulation regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization positive regulation of multicellular organismal process positive regulation of synapse assembly cellular response to stimulus response to stimulus signaling adenylate cyclase-activating G protein-coupled receptor signaling pathway cell communication adenylate cyclase-modulating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway signal transduction cell surface receptor signaling pathway Rho-activating G protein-coupled receptor signaling pathway behavior locomotory behavior locomotion involved in locomotory behavior locomotion neuron migration cellular developmental process generation of neurons neurogenesis cell differentiation cell migration cell motility response to chemical response to oxygen-containing compound response to nitrogen compound response to cocaine response to alkaloid maintenance of synapse structure postsynapse organization cellular component maintenance cell junction maintenance organelle organization maintenance of postsynaptic specialization structure postsynaptic density organization postsynaptic specialization organization	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction glutamatergic synapse Schaffer collateral - CA1 synapse cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction glutamatergic synapse Schaffer collateral - CA1 synapse axon cell projection neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, E	IPR000884	Thrombospondin type-1 (TSP1) repeat	Repeat
A, E	IPR057755	Netrin receptor UNC5A-D-like, N-terminal domain	Domain
A, E	IPR042058	UNC5D, Death domain	Domain
A, E	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, E	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, E	IPR003598	Immunoglobulin subtype 2	Domain
A, E	IPR036383	Thrombospondin type-1 repeat superfamily	Homologous Superfamily
A, E	IPR033772	UPA domain	Domain
A, E	IPR037936	Netrin receptor UNC5A-D	Family
A, E	IPR000488	Death domain	Domain
A, E	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, E	IPR003599	Immunoglobulin domain subtype	Domain
A, E	IPR007110	Immunoglobulin-like domain	Domain
A, E	IPR013098	Immunoglobulin I-set	Domain
A, E	IPR000906	ZU5 domain	Domain
B, F	IPR000372	Leucine-rich repeat N-terminal domain	Domain
B, F	IPR050333	Small Leucine-Rich Proteoglycans	Family
B, F	IPR003591	Leucine-rich repeat, typical subtype	Repeat
B, F	IPR003961	Fibronectin type III	Domain
B, F	IPR001611	Leucine-rich repeat	Repeat
B, F	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B, F	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, F	IPR000483	Cysteine-rich flanking region, C-terminal	Domain
B, F	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
C, D, G, H	IPR017983	GPCR, family 2, secretin-like, conserved site	Conserved Site
C, D, G, H	IPR036445	GPCR family 2, extracellular hormone receptor domain superfamily	Homologous Superfamily
C, D, G, H	IPR000832	GPCR, family 2, secretin-like	Family
C, D, G, H	IPR043159	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Homologous Superfamily
C, D, G, H	IPR000203	GPS motif	Conserved Site
C, D, G, H	IPR003112	Olfactomedin-like domain	Domain
C, D, G, H	IPR017981	GPCR, family 2-like, 7TM	Domain
C, D, G, H	IPR003924	GPCR, family 2, latrophilin	Family
C, D, G, H	IPR001879	GPCR, family 2, extracellular hormone receptor domain	Domain
C, D, G, H	IPR003334	GPCR, family 2, latrophilin, C-terminal	Domain
C, D, G, H	IPR032471	AGRL2-4 , GAIN subdomain A	Domain
C, D, G, H	IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain	Domain
C, D, G, H	IPR046338	GAIN domain superfamily	Homologous Superfamily
C, D, G, H	IPR057244	GAIN, subdomain B	Domain