Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
FSCOP2 FamilyASTN-2 EGF-like domain8052124 4007581 SCOP2 (2022-06-29)
FSCOP2 FamilyMACPF-like8049565 4006548 SCOP2 (2022-06-29)
FSCOP2 FamilyLDL receptor-like module8052140 4003373 SCOP2 (2022-06-29)
FSCOP2 FamilyTSP-1 type 1 repeat8052126 4003415 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyMAC/CDC-like8052039 3002081 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyLDL receptor-like module8052141 3000728 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2 (2022-06-29)
GSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
USCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
USCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
USCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
USCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyMAC/CDC-like8052039 3002081 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLDL receptor-like module8052141 3000728 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyTSP-1 type 1 repeat8052127 3000814 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyEGF/Laminin-like8052125 3000412 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01823e5fmwA5 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
AF_UNCLASSIFIEDe5fmwA8 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
APF00057e5fmwA7 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
APF00090e5fmwA6 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
BPF01823e5fmwB1 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
BF_UNCLASSIFIEDe5fmwB4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
BPF00057e5fmwB2 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
BPF00090e5fmwB3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
CPF01823e5fmwC1 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
CF_UNCLASSIFIEDe5fmwC3 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
CPF00057e5fmwC4 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
CPF00090e5fmwC2 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
DPF01823e5fmwD1 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
DF_UNCLASSIFIEDe5fmwD3 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
DPF00057e5fmwD4 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
DPF00090e5fmwD2 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
EPF01823e5fmwE2 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
EF_UNCLASSIFIEDe5fmwE1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
EPF00057e5fmwE4 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
EPF00090e5fmwE3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
FPF01823e5fmwF2 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
FF_UNCLASSIFIEDe5fmwF3 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
FPF00057e5fmwF1 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
FPF00090e5fmwF4 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
GPF01823e5fmwG3 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
GF_UNCLASSIFIEDe5fmwG1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
GPF00057e5fmwG2 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
GPF00090e5fmwG4 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
HPF01823e5fmwH4 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
HF_UNCLASSIFIEDe5fmwH1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
HPF00057e5fmwH3 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
HPF00090e5fmwH2 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
JPF01823e5fmwJ1 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
JF_UNCLASSIFIEDe5fmwJ4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
JPF00057e5fmwJ2 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
JPF00090e5fmwJ3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
KPF01823e5fmwK2 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
KF_UNCLASSIFIEDe5fmwK4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
KPF00057e5fmwK1 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
KPF00090e5fmwK3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
LPF01823e5fmwL4 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
LF_UNCLASSIFIEDe5fmwL1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
LPF00057e5fmwL2 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
LPF00090e5fmwL3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
MPF01823e5fmwM3 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
MF_UNCLASSIFIEDe5fmwM1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
MPF00057e5fmwM4 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
MPF00090e5fmwM2 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
QPF01823e5fmwQ2 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
QF_UNCLASSIFIEDe5fmwQ1 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
QPF00057e5fmwQ3 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
QPF00090e5fmwQ4 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
RPF01823e5fmwR2 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
RF_UNCLASSIFIEDe5fmwR4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
RPF00057e5fmwR3 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
RPF00090e5fmwR1 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
SPF01823e5fmwS3 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
SF_UNCLASSIFIEDe5fmwS4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
SPF00057e5fmwS1 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
SPF00090e5fmwS2 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
TPF01823e5fmwT2 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
TF_UNCLASSIFIEDe5fmwT4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
TPF00057e5fmwT1 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
TPF00090e5fmwT3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
UPF01823e5fmwU1 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
UF_UNCLASSIFIEDe5fmwU4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
UPF00057e5fmwU2 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
UPF00090e5fmwU3 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
VPF01823e5fmwV4 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
VF_UNCLASSIFIEDe5fmwV3 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
VPF00057e5fmwV2 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
VPF00090e5fmwV1 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
IPF01823e5fmwI4 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
IF_UNCLASSIFIEDe5fmwI2 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
IPF00057e5fmwI3 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
IPF00090e5fmwI1 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
NPF01823e5fmwN3 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
NF_UNCLASSIFIEDe5fmwN2 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
NPF00057e5fmwN1 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
NPF00090e5fmwN4 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
OPF01823e5fmwO2 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
OF_UNCLASSIFIEDe5fmwO3 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
OPF00057e5fmwO1 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
OPF00090e5fmwO4 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)
PPF01823e5fmwP3 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: PF01823ECOD (1.6)
PF_UNCLASSIFIEDe5fmwP2 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: F_UNCLASSIFIEDECOD (1.6)
PPF00057e5fmwP1 A: few secondary structure elementsX: EGF-likeH: LDL receptor-like module (From Topology)T: LDL receptor-like moduleF: PF00057ECOD (1.6)
PPF00090e5fmwP4 A: few secondary structure elementsX: TSP-1 type 1 repeat (From Topology)H: TSP-1 type 1 repeat (From Topology)T: TSP-1 type 1 repeatF: PF00090ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00090Thrombospondin type 1 domain (TSP_1)Thrombospondin type 1 domain- Domain
A, B, C, D, E
PF01823MAC/Perforin domain (MACPF)MAC/Perforin domainThe membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Fr ...The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerisation of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerises into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (Pfam:PF01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
POLYC9-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR000884Thrombospondin type-1 (TSP1) repeatRepeat
A, B, C, D, E
IPR020864Membrane attack complex component/perforin (MACPF) domainDomain
A, B, C, D, E
IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
A, B, C, D, E
IPR036383Thrombospondin type-1 (TSP1) repeat superfamilyHomologous Superfamily
A, B, C, D, E
IPR001862Membrane attack complex component/perforin/complement C9Family
A, B, C, D, E
IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
A, B, C, D, E
IPR036055LDL receptor-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR020863Membrane attack complex component/perforin domain, conserved siteConserved Site

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM