5F2Q | pdb_00005f2q

C-type lectin from Bothrops jararacussu

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d5f2qj_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
I	d5f2qi_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
H	d5f2qh_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
G	d5f2qg_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
F	d5f2qf_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
E	d5f2qe_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
D	d5f2qd_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
C	d5f2qc_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
B	d5f2qb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)
A	d5f2qa_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	automated matches	(Bothrops jararacussu ) [TaxId: 8726 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C-type lectin-like	8065522	3001261	SCOP2B (2022-06-29)
A	SCOP2 Family	C-type lectin domain	8065521	4002453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C-type lectin-like	8065522	3001261	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	AA9	e5f2qJ1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
I	AA9	e5f2qI1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
H	AA9	e5f2qH1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
G	AA9	e5f2qG1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
F	AA9	e5f2qF1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
E	AA9	e5f2qE1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
D	AA9	e5f2qD1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
C	AA9	e5f2qC1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
B	AA9	e5f2qB1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)
A	AA9	e5f2qA1	A: a/b three-layered sandwiches	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p)	T: Ribosomal protein L29 (L29p)	F: AA9	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
I	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
H	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
G	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
F	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
E	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	C-type lectin BJcuL	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	regulation of biological process regulation of growth regulation of cellular component organization regulation of cellular process negative regulation of biological process biological regulation growth negative regulation of cell growth regulation of cell growth cell growth cellular component organization negative regulation of growth negative regulation of cellular process cellular process regulation of biological process regulation of growth regulation of cellular component organization regulation of cellular process negative regulation of biological process biological regulation growth negative regulation of cell growth regulation of cell growth cell growth cellular component organization negative regulation of growth negative regulation of cellular process cellular process cellular component organization or biogenesis	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR001304	C-type lectin-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR018378	C-type lectin, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR050111	C-type lectin and snaclec domain-containing protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR016187	C-type lectin fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.