5ER6 | pdb_00005er6

Crystal structure of an oxidoreductase from Brucella ovis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5er6d_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Brucella ovis ATCC 25840 ) [TaxId: 444178 ],	SCOPe (2.08)
C	d5er6c1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Brucella ovis ATCC 25840 ) [TaxId: 444178 ],	SCOPe (2.08)
C	d5er6c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Brucella ovis ATCC 25840 ) [TaxId: 444178 ],	SCOPe (2.08)
B	d5er6b1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Brucella ovis ATCC 25840 ) [TaxId: 444178 ],	SCOPe (2.08)
B	d5er6b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Brucella ovis ATCC 25840 ) [TaxId: 444178 ],	SCOPe (2.08)
A	d5er6a1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Brucella ovis ATCC 25840 ) [TaxId: 444178 ],	SCOPe (2.08)
A	d5er6a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Brucella ovis ATCC 25840 ) [TaxId: 444178 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	SDR-like	8063250	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8063250	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8063250	3000038	SCOP2B (2022-06-29)
A	SCOP2 Family	Short-chain dehydrogenases/reductases, SDR	8063249	4000029	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8063250	3000038	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TFIIE_beta	e5er6D1	A: a/b three-layered sandwiches	X: CBS-domain	H: Porins	T: Invertebrate chitin-binding proteins	F: TFIIE_beta	ECOD (v294.1)
C	TFIIE_beta	e5er6C1	A: a/b three-layered sandwiches	X: CBS-domain	H: Porins	T: Invertebrate chitin-binding proteins	F: TFIIE_beta	ECOD (v294.1)
B	TFIIE_beta	e5er6B1	A: a/b three-layered sandwiches	X: CBS-domain	H: Porins	T: Invertebrate chitin-binding proteins	F: TFIIE_beta	ECOD (v294.1)
A	TFIIE_beta	e5er6A1	A: a/b three-layered sandwiches	X: CBS-domain	H: Porins	T: Invertebrate chitin-binding proteins	F: TFIIE_beta	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Oxidoreductase, short chain dehydrogenase/reductase family	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process fatty acid elongation carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process fatty acid elongation carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR057326	Ketoreductase domain	Domain
A, B, C, D	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B, C, D	IPR020904	Short-chain dehydrogenase/reductase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.