5DQQ

Structure, inhibition and regulation of two-pore channel TPC1 from Arabidopsis thaliana

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF13499	e5dqqA1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF13499	ECOD (1.6)
A	PF00520	e5dqqA3	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: PF00520	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Two pore calcium channel protein 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding calcium channel activity monoatomic cation transmembrane transporter activity voltage-gated calcium channel activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity inorganic molecular entity transmembrane transporter activity channel activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity identical protein binding protein binding	regulation of stomatal movement regulation of biological process regulation of cellular process stomatal movement biological regulation cellular process regulation of jasmonic acid metabolic process oxoacid metabolic process cellular biosynthetic process regulation of lipid metabolic process jasmonic acid biosynthetic process long-chain fatty acid biosynthetic process lipid biosynthetic process jasmonic acid metabolic process regulation of stomatal movement regulation of biological process regulation of cellular process stomatal movement biological regulation cellular process regulation of jasmonic acid metabolic process oxoacid metabolic process cellular biosynthetic process regulation of lipid metabolic process jasmonic acid biosynthetic process long-chain fatty acid biosynthetic process lipid biosynthetic process jasmonic acid metabolic process organic acid metabolic process organic acid biosynthetic process carboxylic acid biosynthetic process regulation of primary metabolic process organic substance metabolic process cellular ketone metabolic process regulation of small molecule metabolic process organic substance biosynthetic process small molecule metabolic process regulation of biosynthetic process fatty acid metabolic process long-chain fatty acid metabolic process regulation of cellular ketone metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process regulation of jasmonic acid biosynthetic process cellular metabolic process carboxylic acid metabolic process primary metabolic process regulation of cellular metabolic process fatty acid biosynthetic process regulation of cellular biosynthetic process biosynthetic process cellular lipid metabolic process regulation of fatty acid metabolic process regulation of fatty acid biosynthetic process metabolic process monocarboxylic acid metabolic process regulation of lipid biosynthetic process regulation of metabolic process lipid metabolic process localization transport monoatomic ion transport monoatomic cation transport establishment of localization calcium ion transport metal ion transport developmental process multicellular organism development multicellular organismal process anatomical structure development post-embryonic development seed germination seedling development cellular response to stimulus response to stimulus signaling intracellular signal transduction cell communication calcium-mediated signaling intracellular signaling cassette signal transduction	membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytosol cell periphery plasma membrane membrane vacuolar membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytosol cell periphery plasma membrane membrane vacuolar membrane vacuole bounding membrane of organelle organelle membrane plant-type vacuole protein-containing complex transmembrane transporter complex membrane protein complex transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005821	Ion transport domain	Domain
A	IPR044581	Two pore calcium channel protein 1, plant	Family
A	IPR002048	EF-hand domain	Domain
A	IPR011992	EF-hand domain pair	Homologous Superfamily
A	IPR027359	Voltage-dependent channel domain superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Ion channel (VIC) superfamily	Two pore Ca2+ channels

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.