5DMP | pdb_00005dmp

Structure of the Archaeal NHEJ Phosphoesterase from Methanocella paludicola.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyLigD phosphoesterase-like 8048544 4006141 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNHEJ phosphoesterases-like 8092050 3002555 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ALigD_Ne5dmpA1 A: beta barrelsX: Oncogene product-likeH: LigD phosphoesterase domain (From Topology)T: LigD phosphoesterase domainF: LigD_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13298DNA Ligase D 3'-phosphoesterase domain (LigD_N)DNA Ligase D 3'-phosphoesterase domainThis entry represents a 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, which is involved along with bacterial Ku protein in non-homologous end joining [1]- the less common of two general mechanisms of repairing doubl ...This entry represents a 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, which is involved along with bacterial Ku protein in non-homologous end joining [1]- the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences.
Domain

InterPro: Protein Family Classification InterPro Database Homepage