5CZF | pdb_00005czf

Crystal structure of the PaaA2-ParE2 antitoxin-toxin complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DnaJ	e5czfB1	A: a/b three-layered sandwiches	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v294.1)
A	DnaJ	e5czfA1	A: a/b three-layered sandwiches	X: Thymine dioxygenase JBP1 DNA-binding domain-like	H: Oligo-peptide binding protein (OPPA) insertion domain	T: Oligo-peptide binding protein (OPPA) insertion domain	F: DnaJ	ECOD (v294.1)
D	MMS1_N	e5czfD1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: MMS1_N	ECOD (v294.1)
C	MMS1_N	e5czfC1	A: a/b three-layered sandwiches	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: MMS1_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)
C	3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF21217	Stability determinant (PaaA2)	Stability determinant	-	Family
C, D	PF05016	ParE toxin of type II toxin-antitoxin system, parDE (ParE_toxin)	ParE toxin of type II toxin-antitoxin system, parDE	ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralised by the antitoxin ParD. The family also encompasses RelE/ParE described in [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	PaaA2	molecular adaptor activity	-	-
C, D	Plasmid stabilization protein ParE	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR048851	Stability determinant domain	Domain
C, D	IPR007712	Toxin-antitoxin system, RelE/ParE toxin family	Family
C, D	IPR051803	Type II TA system RelE-like toxin	Family
C, D	IPR035093	Toxin-antitoxin system, RelE/ParE toxin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.