Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
HSCOP2B SuperfamilySNARE-like8082715 3001113 SCOP2B (2022-06-29)
PSCOP2B SuperfamilySNARE-like8082715 3001113 SCOP2B (2022-06-29)
YSCOP2B SuperfamilySNARE-like8082715 3001113 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARase5a1vA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
BRase5a1vB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
IRase5a1vI1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
JRase5a1vJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
RRase5a1vR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
SRase5a1vS1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
CCoatomer_WDAD_Ne5a1vC2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
CANAPC4_WD40_18e5a1vC3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_18ECOD (1.6)
CCoatomer_WDAD_Ce5a1vC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)
TCoatomer_WDAD_Ne5a1vT4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
TANAPC4_WD40_18e5a1vT2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_18ECOD (1.6)
TCoatomer_WDAD_Ce5a1vT3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)
TCOPI_Ce5a1vT5 A: alpha superhelicesX: Repetitive alpha hairpinsH: Coatomer subunit alpha C-terminal domain (From Topology)T: Coatomer subunit alpha C-terminal domainF: COPI_CECOD (1.6)
TCOPI_Ce5a1vT6 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: COPI_CECOD (1.6)
KCoatomer_WDAD_Ne5a1vK2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
KANAPC4_WD40_18e5a1vK3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_18ECOD (1.6)
KCoatomer_WDAD_Ce5a1vK5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)
KCOPI_Ce5a1vK4 A: alpha superhelicesX: Repetitive alpha hairpinsH: Coatomer subunit alpha C-terminal domain (From Topology)T: Coatomer subunit alpha C-terminal domainF: COPI_CECOD (1.6)
KCOPI_Ce5a1vK6 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: COPI_CECOD (1.6)
DANAPC4_WD40_5e5a1vD2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_5ECOD (1.6)
DCoatomer_WDAD_Ne5a1vD1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
DCoatomer_WDAD_Ce5a1vD3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)
LANAPC4_WD40_5e5a1vL1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_5ECOD (1.6)
LCoatomer_WDAD_Ne5a1vL2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
LCoatomer_WDAD_Ce5a1vL3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)
UANAPC4_WD40_5e5a1vU1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_5ECOD (1.6)
UCoatomer_WDAD_Ne5a1vU3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Coatomer_WDAD_NECOD (1.6)
UCoatomer_WDAD_Ce5a1vU2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_WDAD_CECOD (1.6)
ECOP-gamma_platfe5a1vE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: COP-gamma_platfECOD (1.6)
EAdaptin_Ne5a1vE3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
ECoatomer_g_Cplae5a1vE2 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: Coatomer_g_CplaECOD (1.6)
MCOP-gamma_platfe5a1vM1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: COP-gamma_platfECOD (1.6)
MAdaptin_Ne5a1vM3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
MCoatomer_g_Cplae5a1vM2 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: Coatomer_g_CplaECOD (1.6)
VCOP-gamma_platfe5a1vV1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: COP-gamma_platfECOD (1.6)
VAdaptin_Ne5a1vV3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
VCoatomer_g_Cplae5a1vV2 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: Coatomer_g_CplaECOD (1.6)
FClat_adaptor_se5a1vF1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
NClat_adaptor_se5a1vN1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
WClat_adaptor_se5a1vW1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
GCoatamer_beta_Ce5a1vG2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Coatamer_beta_CECOD (1.6)
GAdaptin_Ne5a1vG1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
GCoatomer_b_Cplae5a1vG3 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: Coatomer_b_CplaECOD (1.6)
OCoatamer_beta_Ce5a1vO2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Coatamer_beta_CECOD (1.6)
OAdaptin_Ne5a1vO4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
OCoatomer_b_Cplae5a1vO3 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: Coatomer_b_CplaECOD (1.6)
XCoatamer_beta_Ce5a1vX2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Coatamer_beta_CECOD (1.6)
XAdaptin_Ne5a1vX4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Adaptin_NECOD (1.6)
XCoatomer_b_Cplae5a1vX3 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: Coatomer_b_CplaECOD (1.6)
HClat_adaptor_se5a1vH1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
PClat_adaptor_se5a1vP1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
YClat_adaptor_se5a1vY1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: Clat_adaptor_sECOD (1.6)
QCoatomer_Ee5a1vQ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_EECOD (1.6)
ZCoatomer_Ee5a1vZ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Coatomer_EECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, I, J, R
PF00025ADP-ribosylation factor family (Arf)ADP-ribosylation factor familyPfam combines a number of different Prosite families togetherDomain
C, K, T
PF04053Coatomer WD associated region (Coatomer_WDAD)Coatomer WD associated region- Repeat
C, K, T
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D, L, U
PF04053Coatomer WD associated region (Coatomer_WDAD)Coatomer WD associated region- Repeat
D, L, U
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E, M, V
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
E, M, V
PF16381Coatomer subunit gamma-1 C-terminal appendage platform (Coatomer_g_Cpla)Coatomer subunit gamma-1 C-terminal appendage platformCoatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 ...Coatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 or ADP-ribosylation factor GTPase-activating protein. COPI-coated vesicles mediate retrograde transport from the Golgi back to the ER and intra-Golgi transport. The gamma-COPI is part of one of two subcomplexes that make up the heptameric coatomer complex along with the beta, delta and zeta subunits [1].
Domain
E, M, V
PF08752Coatomer gamma subunit appendage platform subdomain (COP-gamma_platf)Coatomer gamma subunit appendage platform subdomainCOPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at U ...COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at UniProt:P53620, residue W776, which in yeast binds to the ARFGAP Glo3p, and in mammalian gamma-COP binds to a Glo3p orthologue, ARFGAP2 [1].
Domain
F, N, W
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chain- Domain
G, O, X
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
G, O, X
PF14806Coatomer beta subunit appendage platform (Coatomer_b_Cpla)Coatomer beta subunit appendage platformThis family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan.Domain
H, P, Y
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chain- Domain
Q, Z
PF04733Coatomer epsilon subunit (Coatomer_E)Coatomer epsilon subunit- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, I, J, R
ADP-RIBOSYLATION FACTOR 1
C, K, T
COATOMER SUBUNIT ALPHA
D, L, U
COATOMER SUBUNIT BETA
E, M, V
COATOMER SUBUNIT GAMMA-1
F, N, W
COATOMER SUBUNIT ZETA-1-
G, O, X
COATOMER SUBUNIT BETA'
H, P, Y
COATOMER SUBUNIT DELTA-
Q, Z
COATOMER SUBUNIT EPSILON

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, I, J, R
IPR045872ADP-ribosylation factor 1-5Family
A, B, I, J, R
IPR005225Small GTP-binding protein domainDomain
A, B, I, J, R
IPR006689Small GTPase superfamily, ARF/SAR typeFamily
A, B, I, J, R
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C, K, T
IPR019775WD40 repeat, conserved siteConserved Site
C, K, T
IPR016391Coatomer subunit alphaFamily
C, K, T
IPR010714Coatomer, alpha subunit, C-terminalDomain
C, K, T
IPR047312Coatomer subunit alpha, WD Associated RegionDomain
C, K, T
IPR011048Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyHomologous Superfamily
C, K, T
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
C, K, T
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C, K, T
IPR006692Coatomer, WD associated regionDomain
C, K, T
IPR001680WD40 repeatRepeat
C, K, T
IPR020472G-protein beta WD-40 repeatRepeat
D, L, U
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D, L, U
IPR016453Coatomer beta' subunit (COPB2)Family
D, L, U
IPR006692Coatomer, WD associated regionDomain
D, L, U
IPR001680WD40 repeatRepeat
D, L, U
IPR020472G-protein beta WD-40 repeatRepeat
D, L, U
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E, M, V
IPR016024Armadillo-type foldHomologous Superfamily
E, M, V
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
E, M, V
IPR013040Coatomer, gamma subunit, appendage, Ig-like subdomainDomain
E, M, V
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
E, M, V
IPR011989Armadillo-like helicalHomologous Superfamily
E, M, V
IPR032154Coatomer subunit gamma, C-terminalDomain
E, M, V
IPR017106Coatomer gamma subunitFamily
E, M, V
IPR037067Coatomer, gamma subunit, appendage domain superfamilyHomologous Superfamily
E, M, V
IPR012295TBP domain superfamilyHomologous Superfamily
E, M, V
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
F, N, W
IPR000804Clathrin adaptor complex, small chainConserved Site
F, N, W
IPR022775AP complex, mu/sigma subunitDomain
F, N, W
IPR039652Coatomer subunit zetaFamily
F, N, W
IPR011012Longin-like domain superfamilyHomologous Superfamily
G, O, X
IPR016460Coatomer beta subunit (COPB1)Family
G, O, X
IPR016024Armadillo-type foldHomologous Superfamily
G, O, X
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
G, O, X
IPR011710Coatomer beta subunit, C-terminalDomain
G, O, X
IPR029446Coatomer beta subunit, appendage platform domainDomain
G, O, X
IPR011989Armadillo-like helicalHomologous Superfamily
H, P, Y
IPR011012Longin-like domain superfamilyHomologous Superfamily
H, P, Y
IPR027059Coatomer delta subunitFamily
H, P, Y
IPR022775AP complex, mu/sigma subunitDomain
H, P, Y
IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
H, P, Y
IPR028565Mu homology domainDomain
Q, Z
IPR006822Coatomer, epsilon subunitFamily
Q, Z
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily