4ZOH | pdb_00004zoh

Crystal structure of glyceraldehyde oxidoreductase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4zohc2	All alpha proteins	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	automated matches	automated matches	(Sulfurisphaera tokodaii str. 7 ) [TaxId: 273063 ],	SCOPe (2.08)
C	d4zohc1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	automated matches	automated matches	(Sulfurisphaera tokodaii str. 7 ) [TaxId: 273063 ],	SCOPe (2.08)
B	d4zohb2	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	automated matches	automated matches	(Sulfurisphaera tokodaii str. 7 ) [TaxId: 273063 ],	SCOPe (2.08)
B	d4zohb1	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	automated matches	automated matches	(Sulfurisphaera tokodaii str. 7 ) [TaxId: 273063 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Molybdenum cofactor-binding domain	8100405	4001972	SCOP2 (2022-06-29)
A	SCOP2 Family	CO dehydrogenase molybdoprotein N-domain-like	8101105	4001129	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Molybdenum cofactor-binding domain	8100406	3000625	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CO dehydrogenase molybdoprotein N-domain-like	8101106	3000847	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	BD-FAE	e4zohC1	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: BD-FAE	ECOD (v294.1)
B	BD-FAE	e4zohB1	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: BD-FAE	ECOD (v294.1)
A	BD-FAE	e4zohA2	A: a/b three-layered sandwiches	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: BD-FAE	ECOD (v294.1)
A	Gal_mutarotas_2	e4zohA1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Gal_mutarotas_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
C	1.10.150.120	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
B	3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 2	CATH (4.3.0)
B	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
B	3.30.390.50	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
A	3.90.1170.50	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (4.3.0)
A	3.30.365.10	Alpha Beta	2-Layer Sandwich	Aldehyde Oxidoreductase	domain 4	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Source
C	PF01799	[2Fe-2S] binding domain (Fer2_2)	[2Fe-2S] binding domain	Domain
C	PF00111	2Fe-2S iron-sulfur cluster binding domain (Fer2)	2Fe-2S iron-sulfur cluster binding domain	Domain
B	PF00941	FAD binding domain in molybdopterin dehydrogenase (FAD_binding_5)	FAD binding domain in molybdopterin dehydrogenase	Domain
B	PF03450	CO dehydrogenase flavoprotein C-terminal domain (CO_deh_flav_C)	CO dehydrogenase flavoprotein C-terminal domain	Domain
A	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain (Ald_Xan_dh_C)	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain
A	PF20256	Molybdopterin cofactor-binding domain (MoCoBD_2)	Molybdopterin cofactor-binding domain	Domain
A	PF02738	Molybdopterin cofactor-binding domain (MoCoBD_1)	Molybdopterin cofactor-binding domain	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Putative oxidoreductase iron-sulfur subunit	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
B	Putative oxidoreductase FAD-binding subunit	oxidoreductase activity catalytic activity FAD binding flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	-
A	Putative oxidoreductase molybdopterin-binding subunit	oxidoreductase activity catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR053590	Glyceraldehyde dehydrogenase small chain-like	Family
C	IPR002888	[2Fe-2S]-binding	Domain
C	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
C	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
C	IPR036884	[2Fe-2S]-binding domain superfamily	Homologous Superfamily
C	IPR051452	Diverse Oxidoreductases	Family
C	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
B	IPR016167	FAD-binding, type PCMH, subdomain 1	Homologous Superfamily
B	IPR036683	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Homologous Superfamily
B	IPR051312	Diverse Substrate Oxidoreductases	Family
B	IPR053586	Glyceraldehyde dehydrogenase medium chain	Family
B	IPR036318	FAD-binding, type PCMH-like superfamily	Homologous Superfamily
B	IPR016169	FAD-binding, type PCMH, subdomain 2	Homologous Superfamily
B	IPR016166	FAD-binding domain, PCMH-type	Domain
B	IPR005107	CO dehydrogenase flavoprotein, C-terminal	Domain
B	IPR002346	Molybdopterin dehydrogenase, FAD-binding	Domain
A	IPR046867	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Domain
A	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Domain
A	IPR053554	Glyceraldehyde dehydrogenase-related	Family
A	IPR016208	Aldehyde oxidase/xanthine dehydrogenase-like	Family
A	IPR036856	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Homologous Superfamily
A	IPR037165	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Homologous Superfamily
A	IPR008274	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Domain