Annotations: 4ZRL

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PAP_assoc	e4zrlA2	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: PAP/OAS1 substrate-binding domain	F: PAP_assoc	ECOD (1.6)
A	PAP_central_1st_1	e4zrlA1	A: a+b three layers	X: Nucleotidyltransferase-like	H: Nucleotidyltransferase (From Topology)	T: Nucleotidyltransferase	F: PAP_central_1st_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.460.10	Alpha Beta	2-Layer Sandwich	Beta Polymerase	domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03828	Cid1 family poly A polymerase (PAP_assoc)	Cid1 family poly A polymerase	-	Family
A	PF22600	Poly(A) RNA polymerase, mitochondrial-like, central palm domain (MTPAP-like_central)	Poly(A) RNA polymerase, mitochondrial-like, central palm domain	This domain is found in human Poly(A) RNA polymerase, mitochondrial (MTPAP) and similar proteins from eukaryotes. MTPAP is a noncanonical polymerase that creates the 3' poly(A) tail of mitochondrial transcripts. It contains three domains: a N-termina ...	This domain is found in human Poly(A) RNA polymerase, mitochondrial (MTPAP) and similar proteins from eukaryotes. MTPAP is a noncanonical polymerase that creates the 3' poly(A) tail of mitochondrial transcripts. It contains three domains: a N-terminal domain RL (Pfam:PF17797) and the canonical palm (this entry) and fingers domains. This domain shows a five -stranded beta-sheet with the three catalytic aspartic acid residues located on its surface [6], together with several alpha- helices, forming an alpha-beta configuration.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Defective in germ line development protein 3	protein binding binding protein domain specific binding RNA binding nucleic acid binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity polynucleotide adenylyltransferase activator activity	developmental process multicellular organism development multicellular organismal process anatomical structure development nematode larval development larval development post-embryonic development spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation developmental process multicellular organism development multicellular organismal process anatomical structure development nematode larval development larval development post-embryonic development spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular component organization nuclear division organelle organization organelle fission cellular process cellular component organization or biogenesis mitotic cell cycle process cytoskeleton-dependent cytokinesis mitotic cytokinesis cytokinesis cell division cell cycle mitotic cell cycle cell cycle process nucleobase-containing compound metabolic process RNA metabolic process metabolic process primary metabolic process macromolecule metabolic process cytosolic mRNA polyadenylation mRNA metabolic process nucleic acid metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process regulation of metabolic process positive regulation of cellular process masculinization of hermaphroditic germ-line sex determination germ-line sex determination hermaphrodite germ-line sex determination regulation of protein metabolic process translation protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of translation protein metabolic process nucleobase-containing compound biosynthetic process mRNA processing RNA biosynthetic process nucleic acid biosynthetic process RNA processing positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization regulation of mitotic nuclear division positive regulation of mitotic nuclear division regulation of mitotic cell cycle positive regulation of cell cycle process regulation of cell cycle mitotic nuclear division regulation of cell cycle process positive regulation of nuclear division regulation of organelle organization positive regulation of cell cycle regulation of nuclear division vulval development animal organ development cellular developmental process stem cell division cell development cellular process involved in reproduction in multicellular organism germ-line stem cell division cell differentiation germ cell development regulation of multicellular organism growth regulation of growth regulation of developmental growth regulation of developmental process developmental growth growth positive regulation of multicellular organism growth positive regulation of developmental process multicellular organism growth positive regulation of growth positive regulation of multicellular organismal process regulation of multicellular organismal process positive regulation of developmental growth regulation of reproductive process meiotic cell cycle process regulation of meiosis I meiosis I meiotic nuclear division positive regulation of reproductive process regulation of meiotic cell cycle meiotic cell cycle positive regulation of meiotic cell cycle regulation of meiotic nuclear division meiosis I cell cycle process positive regulation of meiosis I positive regulation of meiotic nuclear division embryo development ending in birth or egg hatching embryo development	intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle pole plasm membraneless organelle cytoplasm supramolecular complex transferase complex, transferring phosphorus-containing groups intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle pole plasm membraneless organelle cytoplasm supramolecular complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex RNA-directed RNA polymerase complex transferase complex intracellular protein-containing complex perinuclear region of cytoplasm
A	Poly(A) RNA polymerase gld-2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding poly(A) RNA polymerase activity adenylyltransferase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding metal ion binding	nucleobase-containing compound metabolic process RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process cytosolic mRNA polyadenylation mRNA metabolic process nucleic acid metabolic process regulation of biological process regulation of cellular process biological regulation cell division regulation of cell division nucleobase-containing compound metabolic process RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process cytosolic mRNA polyadenylation mRNA metabolic process nucleic acid metabolic process regulation of biological process regulation of cellular process biological regulation cell division regulation of cell division cellular component organization nucleus organization organelle organization cellular component organization or biogenesis positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization sexual reproduction regulation of reproductive process reproductive process positive regulation of biological process meiotic cell cycle process regulation of meiosis I meiosis I positive regulation of cell cycle process meiotic nuclear division cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process positive regulation of reproductive process regulation of meiotic cell cycle regulation of cell cycle process organelle fission meiotic cell cycle positive regulation of nuclear division positive regulation of meiotic cell cycle regulation of organelle organization positive regulation of cell cycle regulation of meiotic nuclear division nuclear division meiosis I cell cycle process positive regulation of meiosis I regulation of nuclear division positive regulation of meiotic nuclear division developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching anatomical structure development embryo development gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA 3'-end processing RNA processing mRNA processing regulation of mitotic nuclear division positive regulation of mitotic nuclear division mitotic cell cycle regulation of mitotic cell cycle mitotic nuclear division mitotic cell cycle process	intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle pole plasm membraneless organelle cytoplasm supramolecular complex transferase complex, transferring phosphorus-containing groups intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle pole plasm membraneless organelle cytoplasm supramolecular complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex RNA-directed RNA polymerase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR055002	GLD-3_KH2	Unknown
B	IPR049309	Defective in germ line development protein 3, KH3 domain	Domain
B	IPR049310	Defective in germ line development protein 3, KH4 domain	Domain
B	IPR041194	Defective in germ line development protein 3-like, KH5 domain	Domain
B	IPR055003	GLD-3, KH3 domain	Domain
A	IPR054708	Poly(A) RNA polymerase, mitochondrial-like, central palm domain	Domain
A	IPR043519	Nucleotidyltransferase superfamily	Homologous Superfamily
A	IPR002058	PAP/25A-associated	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.