4ZOQ | pdb_00004zoq

Crystal Structure of a Lanthipeptide Protease

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	MG2	e4zoqP1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: MG2	ECOD (v294.1)
N [auth O]	MG2	e4zoqO1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: MG2	ECOD (v294.1)
L [auth N]	MG2	e4zoqN1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: MG2	ECOD (v294.1)
J [auth M]	CHAD	e4zoqM1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: SH3	T: SH3	F: CHAD	ECOD (v294.1)
H [auth L]	MG2	e4zoqL1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: MG2	ECOD (v294.1)
F [auth K]	MG2	e4zoqK1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: MG2	ECOD (v294.1)
D [auth J]	MG2	e4zoqJ1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: MG2	ECOD (v294.1)
B [auth I]	MG2	e4zoqI1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Pseudouridine synthase	T: Pseudouridine synthase	F: MG2	ECOD (v294.1)
K [auth F]	LicP_NPro	e4zoqF1	A: a/b three-layered sandwiches	X: Alpha-beta plaits	H: Protease propeptides/inhibitors	T: Protease propeptides/inhibitors	F: LicP_NPro	ECOD (v294.1)
I [auth E]	GP120	e4zoqE1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain	T: Ribosomal protein L31e/gp120 outer domain	F: GP120	ECOD (v294.1)
G [auth D]	GP120	e4zoqD1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain	T: Ribosomal protein L31e/gp120 outer domain	F: GP120	ECOD (v294.1)
E [auth C]	GP120	e4zoqC1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain	T: Ribosomal protein L31e/gp120 outer domain	F: GP120	ECOD (v294.1)
C [auth B]	GP120	e4zoqB1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain	T: Ribosomal protein L31e/gp120 outer domain	F: GP120	ECOD (v294.1)
A	GP120	e4zoqA1	A: a/b three-layered sandwiches	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain	T: Ribosomal protein L31e/gp120 outer domain	F: GP120	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
N [auth O]	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
L [auth N]	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
J [auth M]	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
H [auth L]	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
F [auth K]	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
D [auth J]	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)
B [auth I]	3.40.50.200	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Peptidase S8/S53 domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	PF00082	Subtilase family (Peptidase_S8)	Subtilase family	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7 ...	Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see Pfam:PF00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	PF22146	LicP N-terminal prodomain (LicP_NPro)	LicP N-terminal prodomain	LicP is a class II LanP protease that is involved in the biosynthesis of the lantibiotic lichenicidin. This enzyme is an extracellularly located serine protease expressed by some strains of Bacillus licheniformis and undergoes a self-cleavage maturat ...	LicP is a class II LanP protease that is involved in the biosynthesis of the lantibiotic lichenicidin. This enzyme is an extracellularly located serine protease expressed by some strains of Bacillus licheniformis and undergoes a self-cleavage maturation resulting in two fragments, the N-terminal prodomain and the C-terminal catalytic protease domain. The prodomain folds into a single compact domain consisting of four antiparallel beta-strands interconnected with two helices [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	Intracellular serine protease	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	Intracellular serine protease	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	IPR015500	Peptidase S8, subtilisin-related	Family
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	IPR023828	Peptidase S8, subtilisin, Ser-active site	Active Site
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	IPR054397	LicP, N-terminal prodomain	Domain
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	IPR023827	Peptidase S8, subtilisin, Asp-active site	Active Site
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	IPR050131	Subtilisin-like serine protease	Family
B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], B [auth I], D [auth J], F [auth K], H [auth L], J [auth M], L [auth N], N [auth O], P	IPR000209	Peptidase S8/S53 domain	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR015500	Peptidase S8, subtilisin-related	Family
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR023828	Peptidase S8, subtilisin, Ser-active site	Active Site
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR054397	LicP, N-terminal prodomain	Domain
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR036852	Peptidase S8/S53 domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR023827	Peptidase S8, subtilisin, Asp-active site	Active Site
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR050131	Subtilisin-like serine protease	Family
A, C [auth B], E [auth C], G [auth D], I [auth E], A, C [auth B], E [auth C], G [auth D], I [auth E], K [auth F], M [auth G], O [auth H]	IPR000209	Peptidase S8/S53 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.