4ZMH | pdb_00004zmh

Crystal structure of a five-domain GH115 alpha-Glucuronidase from the Marine Bacterium Saccharophagus degradans 2-40T

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	galactose-binding domain-like	8053421	3000087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	beta-N-acetylhexosaminidase-like domain	8053419	3000192	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8053417	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PapD-like	8053425	3002067	SCOP2B (2022-06-29)
A	SCOP2 Family	GH115 catalytic domain-like	8044836	4004167	SCOP2 (2022-06-29)
A	SCOP2 Family	GH115 N-terminal domain-like	8053418	4007606	SCOP2 (2022-06-29)
A	SCOP2 Family	GH115 postcatalytic domain-like	8053420	4007607	SCOP2 (2022-06-29)
A	SCOP2 Family	GH115 alpha-Glucuronidase Sde_1755 postcatalytic domain-like	8053424	4007608	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	(Trans)glycosidases	8053417	3000313	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	beta-N-acetylhexosaminidase-like domain	8053419	3000192	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	galactose-binding domain-like	8053421	3000087	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PapD-like	8053425	3002067	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PDZ_2	e4zmhB1	A: a/b three-layered sandwiches	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (v294.1)
A	PDZ_2	e4zmhA1	A: a/b three-layered sandwiches	X: alpha/beta knot	H: alpha/beta knot	T: alpha/beta knot	F: PDZ_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.379.10	Alpha Beta	2-Layer Sandwich	Chitobiase	domain 2	CATH (4.3.0)
B	3.20.20.520	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosyl hydrolase family 115	CATH (4.3.0)
A	3.30.379.10	Alpha Beta	2-Layer Sandwich	Chitobiase	domain 2	CATH (4.3.0)
A	3.20.20.520	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosyl hydrolase family 115	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF15979	Glycosyl hydrolase family 115 (Glyco_hydro_115)	Glycosyl hydrolase family 115	-	Family
A, B	PF17829	Glycosyl hydrolase family 115 C-terminal domain (GH115_C)	Glycosyl hydrolase family 115 C-terminal domain	This domain is found at the C-terminus of glycosyl hydrolase family 115 proteins [1]. This domain has a beta-sandwich fold [1].	Domain
A, B	PF19190	Viral BACON domain (BACON_2)	Viral BACON domain	This family represents a distinct class of BACON domains found in crAss-like phages, the most common viral family in the human gut, in which they are found in tail fiber genes. This suggests they may play a role in phage-host interactions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Uncharacterized protein	hydrolase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042301	Glycosyl hydrolase 115 superfamily	Homologous Superfamily
A, B	IPR041437	Gylcosyl hydrolase 115 C-terminal domain	Domain
A, B	IPR029018	Beta-hexosaminidase-like, domain 2	Homologous Superfamily
A, B	IPR024361	Bacteroidetes-Associated Carbohydrate-binding Often N-terminal	Domain
A, B	IPR031924	Glycosyl hydrolase family 115	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.