4Y9V | pdb_00004y9v

Gp54 tailspike of Acinetobacter baumannii bacteriophage AP22 in complex with A. baumannii capsular saccharide


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF07793e4y9vA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Ig-like domain in tailspike protein (From Topology)T: Ig-like domain in tailspike proteinF: EUF07793ECOD (1.6)
AEUF07795e4y9vA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Ig-like domain in tailspike protein (From Topology)T: Ig-like domain in tailspike proteinF: EUF07795ECOD (1.6)
APectate_lyase_3_likee4y9vA3 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Pectin lyase-like (From Topology)T: Pectin lyase-likeF: Pectate_lyase_3_likeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22442Gp49, pectin lyase-like (Gp49_Pectate_lyase_like)Gp49, pectin lyase-like- Repeat
PF20745Tailspike protein-like, Ig-like domain (TSP_Ig-like)Tailspike protein-like, Ig-like domainThis domain is found in Tail spike protein (TSP) from Shigella phage Sf6 and similar sequences from tailed bacteriophages and bacterial prophages. It forms a beta-sandwich consisting of two antiparallel, three stranded beta-sheets. A short alpha heli ...This domain is found in Tail spike protein (TSP) from Shigella phage Sf6 and similar sequences from tailed bacteriophages and bacterial prophages. It forms a beta-sandwich consisting of two antiparallel, three stranded beta-sheets. A short alpha helix is included in the connecting loop between the third and fourth strand. This domain is structurally homologous to viral coat proteins [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage