4Y97
Crystal Structure of human Pol alpha B-subunit in complex with C-terminal domain of catalytic subunit
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | DNA polymerase alpha OB-fold domain-like | 8050855 | 4007079 | SCOP2 (2022-06-29) |
A | SCOP2 Family | DNA polymerase subunit-like | 8045194 | 4004346 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleic acid-binding proteins | 8053380 | 3000135 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Metallo-dependent phosphatases | 8053379 | 3001067 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | Metallo-dependent phosphatases | 8053379 | 3001067 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleic acid-binding proteins | 8053380 | 3000135 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Nucleic acid-binding proteins | 8053380 | 3000135 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Metallo-dependent phosphatases | 8053379 | 3001067 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Metallo-dependent phosphatases | 8053379 | 3001067 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Nucleic acid-binding proteins | 8053380 | 3000135 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Zinc finger domain of DNA polymerase-alpha | 8032318 | 3001751 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Zinc finger domain of DNA polymerase-alpha | 8032318 | 3001751 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Zinc finger domain of DNA polymerase-alpha | 8032318 | 3001751 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Zinc finger domain of DNA polymerase-alpha | 8032318 | 3001751 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22062 | e4y97A2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF22062 | ECOD (1.6) |
A | PF04042 | e4y97A1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
C | PF22062 | e4y97C1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF22062 | ECOD (1.6) |
C | PF04042 | e4y97C2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
E | PF22062 | e4y97E2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF22062 | ECOD (1.6) |
E | PF04042 | e4y97E1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
G | PF22062 | e4y97G1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF22062 | ECOD (1.6) |
G | PF04042 | e4y97G2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF04042 | ECOD (1.6) |
B | PF08996 | e4y97B2 | A: few secondary structure elements | X: Rubredoxin-like | H: Zinc finger domain of DNA polymerase-alpha (From Topology) | T: Zinc finger domain of DNA polymerase-alpha | F: PF08996 | ECOD (1.6) |
D | PF08996 | e4y97D2 | A: few secondary structure elements | X: Rubredoxin-like | H: Zinc finger domain of DNA polymerase-alpha (From Topology) | T: Zinc finger domain of DNA polymerase-alpha | F: PF08996 | ECOD (1.6) |
F | PF08996 | e4y97F2 | A: few secondary structure elements | X: Rubredoxin-like | H: Zinc finger domain of DNA polymerase-alpha (From Topology) | T: Zinc finger domain of DNA polymerase-alpha | F: PF08996 | ECOD (1.6) |
H | PF08996 | e4y97H1 | A: few secondary structure elements | X: Rubredoxin-like | H: Zinc finger domain of DNA polymerase-alpha (From Topology) | T: Zinc finger domain of DNA polymerase-alpha | F: PF08996 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.3200.20 | Mainly Alpha | Orthogonal Bundle | Hypothetical protein af0941 | DNA Polymerase alpha, zinc finger | CATH (4.3.0) |
D | 1.10.3200.20 | Mainly Alpha | Orthogonal Bundle | Hypothetical protein af0941 | DNA Polymerase alpha, zinc finger | CATH (4.3.0) |
F | 1.10.3200.20 | Mainly Alpha | Orthogonal Bundle | Hypothetical protein af0941 | DNA Polymerase alpha, zinc finger | CATH (4.3.0) |
H | 1.10.3200.20 | Mainly Alpha | Orthogonal Bundle | Hypothetical protein af0941 | DNA Polymerase alpha, zinc finger | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04042 | DNA polymerase alpha/epsilon subunit B (DNA_pol_E_B) | DNA polymerase alpha/epsilon subunit B | - | Family | |
PF08418 | DNA polymerase alpha subunit B N-terminal (Pol_alpha_B_N) | DNA polymerase alpha subunit B N-terminal | This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation [1]. This domain adopts an OB fold [2]. | Domain | |
PF08996 | DNA Polymerase alpha zinc finger (zf-DNA_Pol) | DNA Polymerase alpha zinc finger | The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parall ... | Domain |