4XI5
gHgL of varicella-zoster virus in complex with human neutralizing antibodies
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Herpes_glycoH_C | e4xi5A1 | A: beta sandwiches | X: C-terminal domain of envelope glycoprotein H (From Topology) | H: C-terminal domain of envelope glycoprotein H (From Topology) | T: C-terminal domain of envelope glycoprotein H | F: Herpes_glycoH_C | ECOD (1.6) |
A | Herpes_glycop_H | e4xi5A2 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: Herpes_glycop_H | ECOD (1.6) |
B | Herpes_UL1 | e4xi5B1 | A: a+b complex topology | X: gH main domain (From Topology) | H: gH main domain (From Topology) | T: gH main domain | F: Herpes_UL1 | ECOD (1.6) |
C | C1-set_4 | e4xi5C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C | V-set | e4xi5C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D | V-set_8 | e4xi5D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | C1-set_1 | e4xi5D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Light Chain | IGKV1 | Kappa | envelope glycoprotein l | envelope glycoprotein h | SAbDab (2024-09-13) | |
Heavy Chain | IGHV3 | - | envelope glycoprotein l | envelope glycoprotein h | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17488 | Herpesvirus glycoprotein H C-terminal domain (Herpes_glycoH_C) | Herpesvirus glycoprotein H C-terminal domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. This entry represents the C-terminal domain. | Domain | |
PF02489 | Herpesvirus glycoprotein H main domain (Herpes_glycop_H) | Herpesvirus glycoprotein H main domain | Herpesvirus glycoprotein H (gH) is a virion associated envelope glycoprotein [2]. Complex formation between gH and gL has been demonstrated in both virions and infected cells [1]. | Domain | |
PF05259 | Herpesvirus glycoprotein L (Herpes_UL1) | Herpesvirus glycoprotein L | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038172 | Herpesvirus glycoprotein H, C-terminal domain superfamily | Homologous Superfamily | |
IPR003493 | Herpesvirus glycoprotein H | Family | |
IPR035305 | Herpesvirus glycoprotein H, C-terminal | Domain | |
IPR038311 | Herpesvirus glycoprotein L, N-terminal domain superfamily | Homologous Superfamily | |
IPR034708 | Envelope glycoprotein L | Family | |
IPR007923 | Herpesvirus glycoprotein L, N-terminal | Domain |