4V61

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth AH]SCOP2B SuperfamilyRibosomal protein S8 8079063 3000709 SCOP2B (2022-06-29)
L [auth AL]SCOP2B SuperfamilyNucleic acid-binding proteins 8098842 3000135 SCOP2B (2022-06-29)
GA [auth BL]SCOP2 FamilyRibosomal protein L13 8066064 4003623 SCOP2 (2022-06-29)
GA [auth BL]SCOP2 SuperfamilyRibosomal protein L13 8066065 3001134 SCOP2 (2022-06-29)
MA [auth BR]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8089130 3000334 SCOP2B (2022-06-29)
NA [auth BS]SCOP2 FamilyRibosomal protein L20 8075017 4001930 SCOP2 (2022-06-29)
NA [auth BS]SCOP2 SuperfamilyRibosomal protein L20 8075018 3000563 SCOP2 (2022-06-29)
K [auth AK]SCOP2B SuperfamilyTranslational machinery components 8098296 3000571 SCOP2B (2022-06-29)
M [auth AM]SCOP2B SuperfamilyS13-like H2TH domain 8098944 3000053 SCOP2B (2022-06-29)
N [auth AN]SCOP2 FamilyRibosomal protein S14p/S29e 8047592 4003647 SCOP2 (2022-06-29)
N [auth AN]SCOP2 SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052598 3000068 SCOP2 (2022-06-29)
O [auth AO]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S13 8072636 4000767 SCOP2 (2022-06-29)
O [auth AO]SCOP2 SuperfamilyS15/NS1 RNA-binding domain 8072637 3001284 SCOP2 (2022-06-29)
P [auth AP]SCOP2 FamilyRibosomal protein S16 8066568 4001077 SCOP2 (2022-06-29)
P [auth AP]SCOP2 SuperfamilyRibosomal protein S16 8066569 3000680 SCOP2 (2022-06-29)
S [auth AS]SCOP2 FamilyRibosomal protein S19 8086059 4001081 SCOP2 (2022-06-29)
S [auth AS]SCOP2 SuperfamilyRibosomal protein S19 8086060 3000686 SCOP2 (2022-06-29)
B [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8098310 3001397 SCOP2B (2022-06-29)
Y [auth BD]SCOP2 FamilyRibosomal protein L1p/L10e-like 8079348 4002929 SCOP2 (2022-06-29)
Y [auth BD]SCOP2 SuperfamilyRibosomal protein L1p/L10e-like 8079349 3001911 SCOP2 (2022-06-29)
BA [auth BG]SCOP2B SuperfamilyRibosomal protein L4 8080708 3001146 SCOP2B (2022-06-29)
CA [auth BH]SCOP2B SuperfamilyRL5-like 8073876 3001709 SCOP2B (2022-06-29)
HA [auth BM]SCOP2 FamilyRibosomal protein L14 8072035 4001826 SCOP2 (2022-06-29)
HA [auth BM]SCOP2 Superfamily50S Ribosomal protein L14-like 8072036 3000433 SCOP2 (2022-06-29)
JA [auth BO]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8076047 3000884 SCOP2B (2022-06-29)
D [auth AD]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083404 3001473 SCOP2B (2022-06-29)
OA [auth BT]SCOP2 FamilyRibosomal protein l21p 8082448 4001630 SCOP2 (2022-06-29)
OA [auth BT]SCOP2 Superfamilyl21p-like 8082449 3002005 SCOP2 (2022-06-29)
QA [auth BV]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8077091 3000210 SCOP2B (2022-06-29)
RA [auth BW]SCOP2 FamilyRibosomal proteins L24p and L21e 8082516 4001752 SCOP2 (2022-06-29)
RA [auth BW]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8082517 3000334 SCOP2 (2022-06-29)
XA [auth B3]SCOP2B SuperfamilyZn-binding ribosomal proteins 8075064 3001320 SCOP2B (2022-06-29)
ZA [auth B5]SCOP2 FamilyRibosomal protein L35p 8083339 4003406 SCOP2 (2022-06-29)
ZA [auth B5]SCOP2 SuperfamilyL35p-like 8083340 3000790 SCOP2 (2022-06-29)
G [auth AG]SCOP2 FamilyRibosomal protein S7 8077982 4001112 SCOP2 (2022-06-29)
G [auth AG]SCOP2 SuperfamilyRibosomal protein S7 8077983 3000799 SCOP2 (2022-06-29)
I [auth AI]SCOP2 FamilyTranslational machinery components 8082672 4000951 SCOP2 (2022-06-29)
I [auth AI]SCOP2 SuperfamilyRibosomal protein S5 domain 2-like 8082673 3000100 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth AE]Ribosomal_S5_Ce4v61AE2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
E [auth AE]Ribosomal_S5e4v61AE1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
F [auth AF]Ribosomal_S6e4v61AF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
H [auth AH]Ribosomal_S8_Ne4v61AH2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
H [auth AH]Ribosomal_S8_Ce4v61AH1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
J [auth AJ]Ribosomal_S10e4v61AJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
L [auth AL]Ribosom_S12_S23e4v61AL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
T [auth AT]Ribosomal_S20pe4v61AT1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
U [auth AU]Ribosomal_S21_2e4v61AU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21_2ECOD (1.6)
DA [auth BI]Ribosomal_L6e4v61BI2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
DA [auth BI]Ribosomal_L6_1e4v61BI1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
FA [auth BK]Ribosomal_L11e4v61BK2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
FA [auth BK]Ribosomal_L11_Ne4v61BK1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
GA [auth BL]Ribosomal_L13e4v61BL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
MA [auth BR]Ribosomal_L19e4v61BR1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
NA [auth BS]Ribosomal_L20e4v61BS1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
UA [auth BZ]Ribosomal_L29e4v61BZ1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
VA [auth B1]Ribosomal_L31e4v61B11 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
K [auth AK]Ribosomal_S11e4v61AK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
M [auth AM]Ribosomal_S13_1e4v61AM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
N [auth AN]Ribosomal_S14_1e4v61AN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
O [auth AO]Ribosomal_S15_1e4v61AO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
P [auth AP]Ribosomal_S16_1e4v61AP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
Q [auth AQ]Ribosomal_S17e4v61AQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17ECOD (1.6)
R [auth AR]Ribosomal_S18e4v61AR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
S [auth AS]Ribosomal_S19e4v61AS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
B [auth AB]Ribosomal_S2e4v61AB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
Y [auth BD]Ribosomal_L1_2nd_1e4v61BD1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
Y [auth BD]Ribosomal_L1_1ste4v61BD2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1stECOD (1.6)
Z [auth BE]Ribosomal_L2_1e4v61BE1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
Z [auth BE]Ribosomal_L2_Ce4v61BE2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
AA [auth BF]Ribosomal_L3e4v61BF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
BA [auth BG]Ribosomal_L4e4v61BG1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
CA [auth BH]Ribosomal_L5_Ce4v61BH1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
C [auth AC]Ribosomal_S3_Ce4v61AC2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth AC]KH_2_1e4v61AC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
EA [auth BJ]Ribosomal_L9_Ne4v61BJ2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
EA [auth BJ]Ribosomal_L9_Ce4v61BJ1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_CECOD (1.6)
HA [auth BM]Ribosomal_L14e4v61BM1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
IA [auth BN]Ribosomal_L27Ae4v61BN1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
JA [auth BO]Ribosomal_L16e4v61BO1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
KA [auth BP]Ribosomal_L17_1e4v61BP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
LA [auth BQ]Ribosomal_L18pe4v61BQ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
D [auth AD]S4e4v61AD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
OA [auth BT]Ribosomal_L21pe4v61BT1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
PA [auth BU]Ribosomal_L22e4v61BU1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
QA [auth BV]Ribosomal_L23_1e4v61BV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_1ECOD (1.6)
RA [auth BW]ribosomal_L24_1e4v61BW1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
SA [auth BX]Ribosomal_L27e4v61BX1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
TA [auth BY]Ribosomal_L28e4v61BY1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
WA [auth B2]UNK_F_TYPEe4v61B21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: UNK_F_TYPEECOD (1.6)
XA [auth B3]Ribosomal_L33_1e4v61B31 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33_1ECOD (1.6)
YA [auth B4]Ribosomal_L34_1e4v61B41 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34_1ECOD (1.6)
ZA [auth B5]Ribosomal_L35pe4v61B51 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
AB [auth B6]Ribosomal_L36e4v61B61 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
G [auth AG]Ribosomal_S7_1e4v61AG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
I [auth AI]Ribosomal_S9e4v61AI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth AE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth AE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
F [auth AF]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
H [auth AH]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
L [auth AL]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
FA [auth BK]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
FA [auth BK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
GA [auth BL]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
MA [auth BR]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
NA [auth BS]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
K [auth AK]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
M [auth AM]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
N [auth AN]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth AO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
P [auth AP]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
S [auth AS]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
B [auth AB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
Y [auth BD]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
Z [auth BE]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
Z [auth BE]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
BA [auth BG]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
CA [auth BH]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
CA [auth BH]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
C [auth AC]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
HA [auth BM]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
JA [auth BO]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
D [auth AD]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth AD]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
OA [auth BT]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PA [auth BU]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
QA [auth BV]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
RA [auth BW]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
RA [auth BW]PF00467KOW motif (KOW)KOW motif- Family
XA [auth B3]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
I [auth AI]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth AE]Ribosomal Protein S5
F [auth AF]Ribosomal Protein S6
H [auth AH]Ribosomal Protein S8
J [auth AJ]Ribosomal Protein S10---
L [auth AL]Ribosomal Protein S12
T [auth AT]Ribosomal Protein S20---
U [auth AU]Ribosomal Protein S21---
W [auth BB]5S rRNA---
X [auth BC]4.8S rRNA---
DA [auth BI]Ribosomal Protein L6---
FA [auth BK]Ribosomal Protein L11
GA [auth BL]Ribosomal Protein L13
MA [auth BR]Ribosomal Protein L19
NA [auth BS]Ribosomal Protein L20
UA [auth BZ]Ribosomal Protein L29---
VA [auth B1]Ribosomal Protein L31---
A [auth AA]16S rRNA---
K [auth AK]Ribosomal Protein S11
M [auth AM]Ribosomal Protein S13
N [auth AN]Ribosomal Protein S14
O [auth AO]Ribosomal Protein S15
P [auth AP]Ribosomal Protein S16
Q [auth AQ]Ribosomal Protein S17---
R [auth AR]Ribosomal Protein S18
S [auth AS]Ribosomal Protein S19
B [auth AB]Ribosomal Protein S2
V [auth BA]23S rRNA---
Y [auth BD]Ribosomal Protein L1
Z [auth BE]Ribosomal Protein L2
AA [auth BF]Ribosomal Protein L3---
BA [auth BG]Ribosomal Protein L4
CA [auth BH]Ribosomal Protein L5
C [auth AC]Ribosomal Protein S3
EA [auth BJ]Ribosomal Protein L9---
HA [auth BM]Ribosomal Protein L14
IA [auth BN]Ribosomal Protein L15---
JA [auth BO]Ribosomal Protein L16
KA [auth BP]Ribosomal Protein L17---
LA [auth BQ]Ribosomal Protein L18---
D [auth AD]Ribosomal Protein S4
OA [auth BT]Ribosomal Protein L21
PA [auth BU]Ribosomal Protein L22
QA [auth BV]Ribosomal Protein L23
RA [auth BW]Ribosomal Protein L24
SA [auth BX]Ribosomal Protein L27---
TA [auth BY]Ribosomal Protein L28---
WA [auth B2]Ribosomal Protein L32
XA [auth B3]Ribosomal Protein L33
YA [auth B4]Ribosomal Protein L34
ZA [auth B5]Ribosomal Protein L35
AB [auth B6]Ribosomal Protein L36---
G [auth AG]Ribosomal Protein S7
I [auth AI]Ribosomal Protein S9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth AE]IPR000851Small ribosomal subunit protein uS5Family
E [auth AE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth AE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth AE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth AE]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth AE]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth AE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth AF]IPR000529Small ribosomal subunit protein bS6Family
F [auth AF]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth AF]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth AF]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
H [auth AH]IPR000630Small ribosomal subunit protein uS8Family
H [auth AH]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth AH]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
L [auth AL]IPR006032Small ribosomal subunit protein uS12Family
L [auth AL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth AL]IPR005679Ribosomal protein uS12, bacterial-typeFamily
FA [auth BK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
FA [auth BK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
FA [auth BK]IPR000911Ribosomal protein uL11Family
FA [auth BK]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
FA [auth BK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
FA [auth BK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
FA [auth BK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
GA [auth BL]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
GA [auth BL]IPR005822Large ribosomal subunit protein uL13Family
GA [auth BL]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
GA [auth BL]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
MA [auth BR]IPR001857Large ribosomal subunit protein bL19Family
MA [auth BR]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
MA [auth BR]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth BS]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
NA [auth BS]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
NA [auth BS]IPR005813Large ribosomal subunit protein bL20Family
K [auth AK]IPR001971Small ribosomal subunit protein uS11Family
K [auth AK]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
K [auth AK]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth AK]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
M [auth AM]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth AM]IPR001892Small ribosomal subunit protein uS13Family
M [auth AM]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth AM]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
N [auth AN]IPR001209Small ribosomal subunit protein uS14Family
N [auth AN]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth AN]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
O [auth AO]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
O [auth AO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth AO]IPR000589Small ribosomal subunit protein uS15Family
P [auth AP]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth AP]IPR000307Small ribosomal subunit protein bS16Family
P [auth AP]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
R [auth AR]IPR001648Small ribosomal subunit protein bS18Family
R [auth AR]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth AR]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth AS]IPR002222Small ribosomal subunit protein uS19Family
S [auth AS]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
S [auth AS]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth AS]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
B [auth AB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth AB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth AB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth AB]IPR001865Small ribosomal subunit protein uS2Family
Y [auth BD]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
Y [auth BD]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
Y [auth BD]IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
Y [auth BD]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
Y [auth BD]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
Z [auth BE]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
Z [auth BE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth BE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth BE]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
Z [auth BE]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
Z [auth BE]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Z [auth BE]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
Z [auth BE]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
Z [auth BE]IPR002171Large ribosomal subunit protein uL2Family
BA [auth BG]IPR013005Large ribosomal subunit protein uL4-likeFamily
BA [auth BG]IPR002136Large ribosomal subunit protein uL4Family
BA [auth BG]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
CA [auth BH]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
CA [auth BH]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
CA [auth BH]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
CA [auth BH]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
CA [auth BH]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
CA [auth BH]IPR002132Large ribosomal subunit protein uL5Family
C [auth AC]IPR004044K Homology domain, type 2Domain
C [auth AC]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth AC]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth AC]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth AC]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth AC]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth AC]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
HA [auth BM]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
HA [auth BM]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
HA [auth BM]IPR000218Large ribosomal subunit protein uL14Family
HA [auth BM]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
JA [auth BO]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
JA [auth BO]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
JA [auth BO]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
JA [auth BO]IPR016180Large ribosomal subunit protein uL16 domainDomain
JA [auth BO]IPR047873Large ribosomal subunit protein uL16Family
D [auth AD]IPR002942RNA-binding S4 domainDomain
D [auth AD]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth AD]IPR022801Small ribosomal subunit protein uS4Family
D [auth AD]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth AD]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth AD]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
OA [auth BT]IPR028909Large ribosomal subunit protein bL21-likeFamily
OA [auth BT]IPR001787Large ribosomal subunit protein bL21Family
OA [auth BT]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
OA [auth BT]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
PA [auth BU]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
PA [auth BU]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
PA [auth BU]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
PA [auth BU]IPR001063Large ribosomal subunit protein uL22Family
PA [auth BU]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
QA [auth BV]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
QA [auth BV]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
QA [auth BV]IPR013025Large ribosomal subunit protein uL23-likeFamily
RA [auth BW]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
RA [auth BW]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
RA [auth BW]IPR003256Large ribosomal subunit protein uL24Family
RA [auth BW]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
RA [auth BW]IPR005824KOWDomain
RA [auth BW]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
WA [auth B2]IPR002677Large ribosomal subunit protein bL32Family
WA [auth B2]IPR044958Large ribosomal subunit protein bL32, plant/cyanobacteria typeFamily
WA [auth B2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XA [auth B3]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XA [auth B3]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
XA [auth B3]IPR001705Large ribosomal subunit protein bL33Family
XA [auth B3]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
YA [auth B4]IPR000271Large ribosomal subunit protein bL34Family
ZA [auth B5]IPR021137Large ribosomal subunit protein bL35-likeFamily
ZA [auth B5]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
ZA [auth B5]IPR001706Large ribosomal subunit protein bL35Family
ZA [auth B5]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
G [auth AG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth AG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth AG]IPR000235Small ribosomal subunit protein uS7Family
G [auth AG]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
G [auth AG]IPR023798Small ribosomal subunit protein uS7 domainDomain
I [auth AI]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth AI]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
I [auth AI]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth AI]IPR000754Small ribosomal subunit protein uS9Family
I [auth AI]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily