4USX | pdb_00004usx

The Structure of the C-terminal YadA-like domain of BPSL2063 from Burkholderia pseudomallei

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	YadA_head,YadA_stalk	e4usxC1	A: a/b three-layered sandwiches	X: jelly-roll	H: Acetamidase/Formamidase-like	T: SGNH hydrolase	F: YadA_head,YadA_stalk	ECOD (v294.1)
B	Glyco_hydro_31_3rd	e4usxB1	A: a/b three-layered sandwiches	X: jelly-roll	H: Acetamidase/Formamidase-like	T: Acetamidase/Formamidase-like	F: Glyco_hydro_31_3rd	ECOD (v294.1)
A	PhyH	e4usxA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: 26S proteasome subunit Rpn2 C-terminal domain	T: 26S proteasome subunit Rpn2 C-terminal domain	F: PhyH	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (utative)
B	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (utative)
A	2.150.10.10	Mainly Beta	2 Solenoid	Alkaline Protease, subunit P, domain 1	Serralysin-like metalloprotease, C-terminal	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF05662	Coiled stalk of trimeric autotransporter adhesin (YadA_stalk)	Coiled stalk of trimeric autotransporter adhesin	-	Motif
A, B, C	PF05658	YadA head domain repeat (2 copies) (YadA_head)	YadA head domain repeat (2 copies)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	TRIMERIC AUTOTRANSPORTER ADHESIN	cation binding ion binding binding metal ion binding small molecule binding	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	cell surface cellular anatomical structure cell outer membrane external encapsulating structure extracellular region membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR008635	Trimeric autotransporter adhesin YadA-like, stalk domain	Domain
A, B, C	IPR008640	Trimeric autotransporter adhesin YadA-like, head domain	Domain
A, B, C	IPR005594	Trimeric autotransporter adhesin YadA-like, C-terminal membrane anchor domain	Domain
A, B, C	IPR024973	ESPR domain	Domain
A, B, C	IPR011049	Serralysin-like metalloprotease, C-terminal	Homologous Superfamily
A, B, C	IPR045584	Pilin-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.