4RLY | pdb_00004rly

Crystal Structure of AnkB Ankyrin Repeats (R1-R9) in Complex with Nav1.2 Ankyrin Binding Domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ankyrin repeat	8067327	4000366	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ankyrin repeat	8067328	3000154	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_S8	e4rlyA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: PEBP-like	F: Peptidase_S8	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00023	Ankyrin repeat (Ank)	Ankyrin repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Nav1.2 - AnkB chimera	protein-macromolecule adaptor activity molecular adaptor activity potassium channel regulator activity transporter activator activity channel regulator activity potassium channel activator activity molecular function activator activity ion channel regulator activity molecular function regulator activity channel activator activity transporter regulator activity ATPase binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity potassium channel regulator activity transporter activator activity channel regulator activity potassium channel activator activity molecular function activator activity ion channel regulator activity molecular function regulator activity channel activator activity transporter regulator activity ATPase binding protein binding binding enzyme binding cytoskeletal protein binding spectrin binding protein-containing complex binding transmembrane transporter binding kinase binding protein kinase binding structural constituent of cytoskeleton structural molecule activity cytoskeletal anchor activity phosphorylation-dependent protein binding modification-dependent protein binding monoatomic cation transmembrane transporter activity voltage-gated sodium channel activity monoatomic ion channel activity sodium channel activity sodium ion transmembrane transporter activity monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity calmodulin binding	heart process multicellular organismal process system process regulation of biological process regulation of heart contraction regulation of system process biological regulation circulatory system process regulation of blood circulation regulation of multicellular organismal process regulation of biological quality heart contraction blood circulation regulation of heart rate heart process multicellular organismal process system process regulation of biological process regulation of heart contraction regulation of system process biological regulation circulatory system process regulation of blood circulation regulation of multicellular organismal process regulation of biological quality heart contraction blood circulation regulation of heart rate regulation of protein stability protein stabilization regulation of calcium ion transport regulation of localization transport regulation of transport regulation of monoatomic ion transport establishment of localization metal ion transport calcium ion transport localization monoatomic ion transport regulation of metal ion transport monoatomic cation transport response to stimulus response to chemical response to methylmercury protein localization to T-tubule protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization cellular process intracellular protein localization localization within membrane protein localization to membrane regulation of biosynthetic process regulation of cellular process positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cardiac muscle cell membrane repolarization membrane repolarization regulation of membrane repolarization ventricular cardiac muscle cell membrane repolarization regulation of cardiac muscle cell membrane repolarization regulation of ventricular cardiac muscle cell membrane repolarization regulation of membrane potential inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis SA node cell to atrial cardiac muscle cell signaling SA node cell to atrial cardiac muscle cell communication cell communication regulation of cardiac muscle cell action potential cell communication involved in cardiac conduction regulation of action potential SA node cell action potential action potential cardiac conduction regulation of SA node cell action potential regulation of cell communication cardiac muscle cell action potential positive regulation of calcium ion transport positive regulation of transport positive regulation of monoatomic ion transport cellular response to stimulus sarcoplasmic reticulum calcium ion transport release of sequestered calcium ion into cytosol by sarcoplasmic reticulum cardiac muscle contraction intracellular signal transduction intracellular signaling cassette signal transduction release of sequestered calcium ion into cytosol by endoplasmic reticulum regulation of release of sequestered calcium ion into cytosol regulation of cardiac muscle contraction muscle contraction transmembrane transport release of sequestered calcium ion into cytosol regulation of transmembrane transport regulation of striated muscle contraction calcium-mediated signaling regulation of muscle contraction signaling monoatomic ion transmembrane transport regulation of monoatomic ion transmembrane transport regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion striated muscle contraction regulation of calcium ion transmembrane transport monoatomic cation transmembrane transport calcium ion transmembrane import into cytosol regulation of cardiac muscle contraction by calcium ion signaling muscle system process regulation of muscle system process regulation of monoatomic cation transmembrane transport calcium ion transmembrane transport regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum membrane organization developmental process cellular developmental process cell development muscle cell differentiation cellular component organization muscle structure development T-tubule organization muscle cell development cell differentiation plasma membrane organization anatomical structure development cellular component organization or biogenesis endomembrane system organization regulation of atrial cardiac muscle cell action potential cardiac muscle cell action potential involved in contraction regulation of actin filament-based process regulation of cardiac conduction atrial cardiac muscle cell to AV node cell signaling actin filament-based process atrial cardiac muscle cell to AV node cell communication cardiac muscle cell contraction atrial cardiac muscle cell action potential actin filament-based movement regulation of actin filament-based movement regulation of cardiac muscle cell contraction actin-mediated cell contraction regulation of heart rate by cardiac conduction ventricular cardiac muscle cell action potential protein localization to cell surface import into cell endocytosis vesicle-mediated transport establishment of protein localization protein transport positive regulation of cation transmembrane transport positive regulation of potassium ion import across plasma membrane regulation of potassium ion transport potassium ion transmembrane transport positive regulation of transmembrane transport positive regulation of monoatomic ion transmembrane transport potassium ion import across plasma membrane import across plasma membrane regulation of potassium ion transmembrane transport inorganic cation import across plasma membrane positive regulation of potassium ion transport positive regulation of potassium ion transmembrane transport inorganic ion import across plasma membrane potassium ion transport regulation of potassium ion import membrane depolarization during cardiac muscle cell action potential membrane depolarization during action potential membrane depolarization membrane depolarization during SA node cell action potential heart development animal organ development cardiac atrium development circulatory system development multicellular organism development cardiac septum development cardiac chamber development atrial septum development system development protein localization to organelle protein localization to endoplasmic reticulum cellular component assembly involved in morphogenesis myelin assembly cellular component biogenesis cellular anatomical entity morphogenesis cellular component assembly cell junction assembly axon ensheathment ensheathment of neurons cell-cell junction assembly cell-cell junction organization nervous system development myelination anatomical structure morphogenesis cell junction organization anatomical structure formation involved in morphogenesis paranodal junction assembly protein localization to M-band response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus cellular response to stress response to hypoxia response to stress response to oxygen levels response to abiotic stimulus cellular response to chemical stress cellular response to environmental stimulus intrinsic apoptotic signaling pathway response to osmotic stress cellular response to osmotic stress cell death apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to osmotic stress cellular response to abiotic stimulus apoptotic process programmed cell death behavior learning or memory nervous system process cognition memory sodium ion transmembrane transport sodium ion transport transmission of nerve impulse neuronal action potential neuron apoptotic process	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane sarcolemma T-tubule M band intracellular anatomical structure cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane sarcolemma T-tubule M band intracellular anatomical structure intracellular membraneless organelle sarcomere intracellular organelle organelle membraneless organelle contractile muscle fiber A band cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex Z disc I band cytosol costamere basal part of cell basal plasma membrane basolateral plasma membrane cell projection neuron projection plasma membrane bounded cell projection cytoskeleton membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle recycling endosome endomembrane system cytoplasmic vesicle vesicle cell-cell junction intercalated disc anchoring junction cell-cell contact zone mitochondrion apical part of cell apical plasma membrane lytic vacuole vacuole lysosome early endosome axon main axon node of Ranvier protein-containing complex sodium channel complex voltage-gated sodium channel complex plasma membrane protein complex membrane protein complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR040745	Ankyrin, UPA domain	Domain
A	IPR000906	ZU5 domain	Domain
A	IPR002110	Ankyrin repeat	Repeat
A	IPR051165	Multifunctional Ankyrin Repeat Domain-Containing Protein	Family
A	IPR000488	Death domain	Domain
A	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A	IPR011029	Death-like domain superfamily	Homologous Superfamily
A	IPR024583	Voltage-gated Na+ ion channel, cytoplasmic domain	Domain
A	IPR001696	Voltage gated sodium channel, alpha subunit	Family
A	IPR058542	SCN5A-like, C-terminal IQ motif	Domain
A	IPR000048	IQ motif, EF-hand binding site	Binding Site
A	IPR010526	Sodium ion transport-associated domain	Domain
A	IPR005821	Ion transport domain	Domain
A	IPR044564	Voltage-gated sodium channel alpha subunit, inactivation gate	Domain
A	IPR043203	Voltage-gated cation channel calcium and sodium	Family
A	IPR027359	Voltage-dependent channel domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q99250	cardiac arrhythmia, ankyrin-B-related long QT syndrome cerebrovascular disorder Neurodevelopmental Disorders familial long QT syndrome invasive ductal breast carcinoma long QT syndrome 1 lung carcinoma malignant glioma atopic eczema medulloblastoma autosomal dominant cardiac arrhythmia (Kuhn) non-small cell lung carcinoma Brugada syndrome pancreatic intraductal papillary-mucinous carcinoma cardiac arrhythmia, ankyrin-B-related long QT syndrome cerebrovascular disorder Neurodevelopmental Disorders familial long QT syndrome invasive ductal breast carcinoma long QT syndrome 1 lung carcinoma malignant glioma atopic eczema medulloblastoma autosomal dominant cardiac arrhythmia (Kuhn) non-small cell lung carcinoma Brugada syndrome pancreatic intraductal papillary-mucinous carcinoma catecholaminergic polymorphic ventricular tachycardia Pick disease primitive neuroectodermal tumor Down syndrome glioblastoma large cell medulloblastoma malignant colon neoplasm acute myeloid leukemia malignant mesothelioma atypical teratoid rhabdoid tumor nephrosclerosis B-cell chronic lymphocytic leukemia oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm catecholaminergic polymorphic ventricular tachycardia 1 pilocytic astrocytoma colorectal cancer psoriasis ductal breast carcinoma in situ hereditary spastic paraplegia lung cancer malignant ependymoma adrenal cortex carcinoma autism spectrum disorder breast carcinoma ovarian cancer cardiomyopathy pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer dermatomyositis epilepsy developmental and epileptic encephalopathy, 11 West syndrome seizures, benign familial infantile, 3 seizures, benign familial neonatal, 3 Seizures, Febrile generalized epilepsy with febrile seizures plus medulloblastoma developmental and epileptic encephalopathy, 6 oligodendroglioma epilepsy with generalized tonic-clonic seizures Pediculus humanus capitis infestation tinea pedis premature ejaculation urethritis glioblastoma primitive neuroectodermal tumor psoriasis attention deficit hyperactivity disorder, inattentive type autism spectrum disorder scabies benign familial neonatal epilepsy breast cancer malignant glioma developmental and epileptic encephalopathy Sjogren syndrome Dravet syndrome neuralgia status epilepticus osteosarcoma tinea corporis pilocytic astrocytoma hemorrhoid large cell medulloblastoma astrocytic tumor Pthirus pubis infestation atypical teratoid rhabdoid tumor lung cancer scrapie bipolar disorder malaria malignant mesothelioma subependymal giant cell astrocytoma partial epilepsy postherpetic neuralgia intellectual disability Lennox-Gastaut syndrome atrial fibrillation benign familial infantile epilepsy lung carcinoma malignant ependymoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.