4QIW
Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth N] | SCOP2 Family | RNA polymerase subunit RPB10 | 8063359 | 4000742 | SCOP2 (2022-06-29) |
J [auth N] | SCOP2 Superfamily | RNA polymerase subunit RPB10 | 8063360 | 3001213 | SCOP2 (2022-06-29) |
U [auth V] | SCOP2B Superfamily | RNA polymerase subunit RPB10 | 8063360 | 3001213 | SCOP2B (2022-06-29) |
F | SCOP2 Family | RNA polymerase II subunit RBP4 (RpoF) | 8086298 | 4002844 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | HRDC-like | 8086299 | 3000132 | SCOP2 (2022-06-29) |
Q [auth R] | SCOP2B Superfamily | HRDC-like | 8086299 | 3000132 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2 Family | RPB5 | 8063567 | 4001502 | SCOP2 (2022-06-29) |
G [auth H] | SCOP2 Superfamily | RPB5-like RNA polymerase subunit | 8063568 | 3001722 | SCOP2 (2022-06-29) |
R [auth S] | SCOP2B Superfamily | RPB5-like RNA polymerase subunit | 8063568 | 3001722 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2 Family | RPB6 | 8078382 | 4001505 | SCOP2 (2022-06-29) |
H [auth K] | SCOP2 Superfamily | RPB6/omega subunit-like | 8078383 | 3000189 | SCOP2 (2022-06-29) |
S [auth T] | SCOP2B Superfamily | RPB6/omega subunit-like | 8078383 | 3000189 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2 Family | RBP11/RpoL | 8080737 | 4003562 | SCOP2 (2022-06-29) |
I [auth L] | SCOP2 Superfamily | RBP11-like subunits of RNA polymerase | 8080738 | 3001655 | SCOP2 (2022-06-29) |
T [auth U] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8080738 | 3001655 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RNA_pol_Rpb1_2 | e4qiwA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RNA_pol_Rpb1_2 | ECOD (1.6) |
A | RNA_pol_Rpb1_1 | e4qiwA1 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_1 | ECOD (1.6) |
A | RNA_pol_Rpb1_4 | e4qiwA2 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_4 | ECOD (1.6) |
A | RNA_pol_Rpb1_3 | e4qiwA4 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_3 | ECOD (1.6) |
L [auth I] | RNA_pol_Rpb1_2 | e4qiwI3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RNA_pol_Rpb1_2 | ECOD (1.6) |
L [auth I] | RNA_pol_Rpb1_1 | e4qiwI1 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_1 | ECOD (1.6) |
L [auth I] | RNA_pol_Rpb1_4 | e4qiwI2 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_4 | ECOD (1.6) |
L [auth I] | RNA_pol_Rpb1_3 | e4qiwI4 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_3 | ECOD (1.6) |
J [auth N] | RNA_pol_N | e4qiwN1 | A: alpha arrays | X: HTH | H: RPB10 (From Topology) | T: RPB10 | F: RNA_pol_N | ECOD (1.6) |
U [auth V] | RNA_pol_N | e4qiwV1 | A: alpha arrays | X: HTH | H: RPB10 (From Topology) | T: RPB10 | F: RNA_pol_N | ECOD (1.6) |
K [auth P] | DNA_RNApol_7kD | e4qiwP1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: DNA_RNApol_7kD | ECOD (1.6) |
V [auth W] | DNA_RNApol_7kD | e4qiwW1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: DNA_RNApol_7kD | ECOD (1.6) |
B | RNA_pol_Rpb2_6_3rd_2 | e4qiwB7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RNA_pol_Rpb2_6_3rd_2 | ECOD (1.6) |
B | RNA_pol_Rpb2_6_2nd_1 | e4qiwB8 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb2_6_2nd_1 | ECOD (1.6) |
B | RNA_pol_Rpb2_3 | e4qiwB2 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_3 | ECOD (1.6) |
B | RNA_pol_Rpb2_1 | e4qiwB9 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_1 | ECOD (1.6) |
B | RNA_pol_Rpb2_45_1 | e4qiwB3 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_45_1 | ECOD (1.6) |
B | RNA_pol_Rpb2_7 | e4qiwB5 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_7 | ECOD (1.6) |
B | RNA_pol_Rpb2_4 | e4qiwB6 | A: a+b complex topology | X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | T: inserted a+b domain in yeast RNA polymerase beta subunit | F: RNA_pol_Rpb2_4 | ECOD (1.6) |
M [auth J] | RNA_pol_Rpb2_6_3rd_2 | e4qiwJ7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: RNA_pol_Rpb2_6_3rd_2 | ECOD (1.6) |
M [auth J] | RNA_pol_Rpb2_6_2nd_1 | e4qiwJ8 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: RNA_pol_Rpb2_6_2nd_1 | ECOD (1.6) |
M [auth J] | RNA_pol_Rpb2_3 | e4qiwJ4 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_3 | ECOD (1.6) |
M [auth J] | RNA_pol_Rpb2_1 | e4qiwJ5 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_1 | ECOD (1.6) |
M [auth J] | RNA_pol_Rpb2_45_1 | e4qiwJ3 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_45_1 | ECOD (1.6) |
M [auth J] | RNA_pol_Rpb2_7 | e4qiwJ2 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: RNA_pol_Rpb2_7 | ECOD (1.6) |
M [auth J] | RNA_pol_Rpb2_4 | e4qiwJ1 | A: a+b complex topology | X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | T: inserted a+b domain in yeast RNA polymerase beta subunit | F: RNA_pol_Rpb2_4 | ECOD (1.6) |
C | RNAP_A'' | e4qiwC3 | A: a+b two layers | X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: RNAP_A'' | ECOD (1.6) |
C | RNAP_II_Rpb1_C | e4qiwC4 | A: a+b two layers | X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: RNAP_II_Rpb1_C | ECOD (1.6) |
C | RNA_pol_Rpb1_5_3rd | e4qiwC1 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_5_3rd | ECOD (1.6) |
C | PRK04309_like | e4qiwC2 | A: a+b complex topology | X: helical domain in yeast RNA-polymerases | H: third helical domain in yeast RNA-polymerase II beta-prime subunit (From Topology) | T: third helical domain in yeast RNA-polymerase II beta-prime subunit | F: PRK04309_like | ECOD (1.6) |
N [auth M] | RNAP_A'' | e4qiwM1 | A: a+b two layers | X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: RNAP_A'' | ECOD (1.6) |
N [auth M] | RNAP_II_Rpb1_C | e4qiwM2 | A: a+b two layers | X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | H: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit (From Topology) | T: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | F: RNAP_II_Rpb1_C | ECOD (1.6) |
N [auth M] | RNA_pol_Rpb1_5_3rd | e4qiwM4 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: RNA_pol_Rpb1_5_3rd | ECOD (1.6) |
N [auth M] | PRK04309_like | e4qiwM3 | A: a+b complex topology | X: helical domain in yeast RNA-polymerases | H: third helical domain in yeast RNA-polymerase II beta-prime subunit (From Topology) | T: third helical domain in yeast RNA-polymerase II beta-prime subunit | F: PRK04309_like | ECOD (1.6) |
D | PRK00783 | e4qiwD2 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PRK00783 | ECOD (1.6) |
D | RNA_pol_A_bac_1 | e4qiwD1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: RNA_pol_A_bac_1 | ECOD (1.6) |
O | PRK00783 | e4qiwO1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PRK00783 | ECOD (1.6) |
O | RNA_pol_A_bac_1 | e4qiwO2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: RNA_pol_A_bac_1 | ECOD (1.6) |
E | S1_1 | e4qiwE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_1 | ECOD (1.6) |
E | SHS2_Rpb7-N | e4qiwE2 | A: a+b two layers | X: Dodecin subunit-like | H: Flavin-binding protein dodecin-like (From Topology) | T: Flavin-binding protein dodecin-like | F: SHS2_Rpb7-N | ECOD (1.6) |
P [auth Q] | S1_1 | e4qiwQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: S1_1 | ECOD (1.6) |
P [auth Q] | SHS2_Rpb7-N | e4qiwQ2 | A: a+b two layers | X: Dodecin subunit-like | H: Flavin-binding protein dodecin-like (From Topology) | T: Flavin-binding protein dodecin-like | F: SHS2_Rpb7-N | ECOD (1.6) |
F | RNA_pol_Rpb4 | e4qiwF1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: RNA_pol_Rpb4 | ECOD (1.6) |
Q [auth R] | RNA_pol_Rpb4 | e4qiwR1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: RNA_pol_Rpb4 | ECOD (1.6) |
G [auth H] | RNA_pol_Rpb5_C | e4qiwH1 | A: a+b two layers | X: RPB5-like RNA polymerase subunit (From Topology) | H: RPB5-like RNA polymerase subunit (From Topology) | T: RPB5-like RNA polymerase subunit | F: RNA_pol_Rpb5_C | ECOD (1.6) |
R [auth S] | RNA_pol_Rpb5_C | e4qiwS1 | A: a+b two layers | X: RPB5-like RNA polymerase subunit (From Topology) | H: RPB5-like RNA polymerase subunit (From Topology) | T: RPB5-like RNA polymerase subunit | F: RNA_pol_Rpb5_C | ECOD (1.6) |
H [auth K] | RNA_pol_Rpb6_1 | e4qiwK1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RPB6 | F: RNA_pol_Rpb6_1 | ECOD (1.6) |
S [auth T] | RNA_pol_Rpb6_1 | e4qiwT1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RPB6 | F: RNA_pol_Rpb6_1 | ECOD (1.6) |
I [auth L] | RNA_pol_L_2 | e4qiwL1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: RNA_pol_L_2 | ECOD (1.6) |
T [auth U] | RNA_pol_L_2 | e4qiwU1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: RNA_pol_L_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, L [auth I] | PF05000 | RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) | RNA polymerase Rpb1, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ... | Domain |
A, L [auth I] | PF04983 | RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) | RNA polymerase Rpb1, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ... | Domain |
A, L [auth I] | PF04998 | RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) | RNA polymerase Rpb1, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ... | Domain |
J [auth N], U [auth V] | PF01194 | RNA polymerases N / 8 kDa subunit (RNA_pol_N) | RNA polymerases N / 8 kDa subunit | - | Domain |
B, M [auth J] | PF04561 | RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) | RNA polymerase Rpb2, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ... | Domain |
B, M [auth J] | PF04565 | RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) | RNA polymerase Rpb2, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ... | Domain |
B, M [auth J] | PF04566 | RNA polymerase Rpb2, domain 4 (RNA_pol_Rpb2_4) | RNA polymerase Rpb2, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain ... | Domain |
B, M [auth J] | PF04563 | RNA polymerase beta subunit (RNA_pol_Rpb2_1) | RNA polymerase beta subunit | - | Family |
B, M [auth J] | PF00562 | RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) | RNA polymerase Rpb2, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ... | Domain |
B, M [auth J] | PF04567 | RNA polymerase Rpb2, domain 5 (RNA_pol_Rpb2_5) | RNA polymerase Rpb2, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain ... | Domain |
PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain | |
PF01000 | RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) | RNA polymerase Rpb3/RpoA insert domain | Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal | Domain | |
E, P [auth Q] | PF03876 | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N) | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at leas ... | Domain |
E, P [auth Q] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
F, Q [auth R] | PF03874 | RNA polymerase Rpb4 (RNA_pol_Rpb4) | RNA polymerase Rpb4 | - | Family |
G [auth H], R [auth S] | PF01191 | RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C) | RNA polymerase Rpb5, C-terminal domain | The assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain. | Domain |
H [auth K], S [auth T] | PF01192 | RNA polymerase Rpb6 (RNA_pol_Rpb6) | RNA polymerase Rpb6 | - | Family |
I [auth L], T [auth U] | PF13656 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |