4Q7J
Complex structure of viral RNA polymerase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Elongation factor Ts (EF-Ts) dimerisation domain | 8035038 | 3000908 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Elongation factor Ts (EF-Ts) dimerisation domain | 8032444 | 3000908 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | UBA-like | 8032443 | 3001235 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Elongation factor Ts (EF-Ts) dimerisation domain | 8032444 | 3000908 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | UBA-like | 8032443 | 3001235 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Elongation factor Ts (EF-Ts) dimerisation domain | 8035038 | 3000908 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056350 | 3002024 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056349 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056352 | 3002024 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056350 | 3002024 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056349 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056352 | 3002024 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e4q7jA2 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00889 | e4q7jA3 | A: a+b two layers | X: T-fold | H: Elongation factor Ts (EF-Ts), dimerisation domain (From Topology) | T: Elongation factor Ts (EF-Ts), dimerisation domain | F: PF00889 | ECOD (1.6) |
E | F_UNCLASSIFIED | e4q7jE2 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: F_UNCLASSIFIED | ECOD (1.6) |
E | PF00889 | e4q7jE3 | A: a+b two layers | X: T-fold | H: Elongation factor Ts (EF-Ts), dimerisation domain (From Topology) | T: Elongation factor Ts (EF-Ts), dimerisation domain | F: PF00889 | ECOD (1.6) |
B | PF03144 | e4q7jB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
B | PF03143 | e4q7jB3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF03143 | ECOD (1.6) |
B | PF00009 | e4q7jB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
F | PF03144 | e4q7jF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
F | PF03143 | e4q7jF3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF03143 | ECOD (1.6) |
F | PF00009 | e4q7jF2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
C | PF03431 | e4q7jC1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF03431 | ECOD (1.6) |
C | PF03431 | e4q7jC2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF03431 | ECOD (1.6) |
G | PF03431 | e4q7jG1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF03431 | ECOD (1.6) |
G | PF03431 | e4q7jG2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF03431 | ECOD (1.6) |
D | PF00575 | e4q7jD1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
H | PF00575 | e4q7jH1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00889 | Elongation factor TS (EF_TS) | Elongation factor TS | - | Family | |
PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain | |
PF03143 | Elongation factor Tu C-terminal domain (GTP_EFTU_D3) | Elongation factor Tu C-terminal domain | Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. | Domain | |
PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain | |
PF03431 | RNA replicase, beta-chain (RNA_replicase_B) | RNA replicase, beta-chain | - | Family | |
PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |