4P7V | pdb_00004p7v

Structural insights into higher-order assembly and function of the bacterial microcompartment protein PduA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d4p7vf_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)
E	d4p7ve_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)
D	d4p7vd_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)
C	d4p7vc_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)
B	d4p7vb_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)
A	d4p7va_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	CcmK-like	8081344	3001326	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CcmK-like	8081344	3001326	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CcmK-like	8081344	3001326	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CcmK-like	8081344	3001326	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CcmK-like	8081344	3001326	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CcmK-like	8081344	3001326	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e4p7vF1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: CID	F:	ECOD (20:10:01)
E		e4p7vE1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: CID	F:	ECOD (20:10:01)
D		e4p7vD1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: CID	F:	ECOD (20:10:01)
C		e4p7vC1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: CID	F:	ECOD (20:10:01)
B		e4p7vB1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: CID	F:	ECOD (20:10:01)
A		e4p7vA1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: CID	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
E	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
D	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
C	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
B	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
A	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Polyhedral bodies	-	diol catabolic process polyol metabolic process alcohol catabolic process catabolic process polyol catabolic process alcohol metabolic process glycol metabolic process diol metabolic process 1,2-propanediol catabolic process glycol catabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR050575	Bacterial microcompartment shell	Family
A, B, C, D, E A, B, C, D, E, F	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR037233	CcmK-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.