4P0D
The T6 backbone pilin of serotype M6 Streptococcus pyogenes has a modular three-domain structure decorated with variable loops and extensions
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Gram-positive pilin BB domain-like | 8045798 | 4004692 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Gram-positive pilin N-terminal domain-like | 8092046 | 4004671 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Gram-positive pilin backbone D3 domain-like | 8092051 | 4004691 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Bacterial adhesin-like | 8048172 | 3000723 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cna B-type domain-like | 8092047 | 3000862 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cna B-type domain-like | 8092052 | 3000862 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07739 | e4p0dA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: EUF07739 | ECOD (1.6) |
A | SdrD_B_1 | e4p0dA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: SdrD_B_1 | ECOD (1.6) |
A | GramPos_pilinBB | e4p0dA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: GramPos_pilinBB | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.740 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00746 | LPXTG cell wall anchor motif (Gram_pos_anchor) | LPXTG cell wall anchor motif | - | Motif | |
PF18002 | T6 antigen Ig like domain (T6_Ig_like) | T6 antigen Ig like domain | This is the N-terminal immunoglobulin-like domain. Family members carrying this domain include Trypsin-resistant surface T6 protein found in Streptococcus pyogenes [1]. | Domain | |
PF17802 | Prealbumin-like fold domain (SpaA) | Prealbumin-like fold domain | This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae [1]. Some members of this family contain an isopeptide bond. | Domain | |
PF16569 | Gram-positive pilin backbone subunit 2, Cna-B-like domain (GramPos_pilinBB) | Gram-positive pilin backbone subunit 2, Cna-B-like domain | GramPos_pilinBB is one of the major backbone units of Gram-positive pili, such as those from S.pneumoniae [1]. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three transthyretin ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Trypsin-resistant surface T6 protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR032334 | Gram-positive pilin backbone subunit 2, Cna-B-like domain | Domain | |
IPR041033 | Prealbumin-like fold domain | Domain | |
IPR041184 | T6 antigen, Ig-like domain | Domain | |
IPR019931 | LPXTG cell wall anchor domain | Domain |