4OGR
crystal structure of P-TEFb complex with AFF4 and Tat
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8039362 | 3000066 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8039362 | 3000066 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8039362 | 3000066 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cyclin-like | 8039367 | 3000768 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cyclin-like | 8039364 | 3000768 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Cyclin-like | 8039364 | 3000768 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Cyclin-like | 8039367 | 3000768 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2B Superfamily | Cyclin-like | 8039367 | 3000768 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2B Superfamily | Cyclin-like | 8039364 | 3000768 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pkinase_Tyr | e4ogrA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
D [auth E] | Pkinase_Tyr | e4ogrE1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
G [auth I] | Pkinase_Tyr | e4ogrI1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
B | KOG0834 | e4ogrB1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: KOG0834 | ECOD (1.6) |
B | Cyclin_N_1 | e4ogrB2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: Cyclin_N_1 | ECOD (1.6) |
E [auth F] | KOG0834 | e4ogrF1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: KOG0834 | ECOD (1.6) |
E [auth F] | Cyclin_N_1 | e4ogrF2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: Cyclin_N_1 | ECOD (1.6) |
H [auth K] | KOG0834 | e4ogrK1 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: KOG0834 | ECOD (1.6) |
H [auth K] | Cyclin_N_1 | e4ogrK2 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: Cyclin_N_1 | ECOD (1.6) |
J [auth D] | Tat | e4ogrD1 | A: extended segments | X: HIV-1 Tat (From Topology) | H: HIV-1 Tat (From Topology) | T: HIV-1 Tat | F: Tat | ECOD (1.6) |
K [auth H] | Tat | e4ogrH1 | A: extended segments | X: HIV-1 Tat (From Topology) | H: HIV-1 Tat (From Topology) | T: HIV-1 Tat | F: Tat | ECOD (1.6) |
L [auth M] | Tat | e4ogrM1 | A: extended segments | X: HIV-1 Tat (From Topology) | H: HIV-1 Tat (From Topology) | T: HIV-1 Tat | F: Tat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth E], G [auth I] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain |
B, E [auth F], H [auth K] | PF00134 | Cyclin, N-terminal domain (Cyclin_N) | Cyclin, N-terminal domain | Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. | Domain |
B, E [auth F], H [auth K] | PF21797 | Cyclin-T2-like, C-terminal domain (CycT2-like_C) | Cyclin-T2-like, C-terminal domain | This domain is found at the C-terminal end of human Cyclin-T2 (CycT2) and similar animal sequences. CycT2 is the regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P ... | Domain |
J [auth D], K [auth H], L [auth M] | PF00539 | Transactivating regulatory protein (Tat) (Tat) | Transactivating regulatory protein (Tat) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A, D [auth E], G [auth I] | TPO | Parent Component: THR :  AA0038 :  O-phospho-L-threonine MOD:00047 |
J [auth D], K [auth H], L [auth M] | ACE | AA0038 , AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  O-phospho-L-threonine MOD:00047 , N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :