4O9D | pdb_00004o9d

Structure of Dos1 propeller

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	WD40, Beta-prop_NOL10_N	e4o9dA1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: WD40, Beta-prop_NOL10_N	ECOD (v294.1)
A [auth B]	WD40, Beta-prop_NOL10_N	e4o9dB1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: WD40, Beta-prop_NOL10_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A [auth B]	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Rik1-associated factor 1	-	organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process organelle assembly protein-containing complex organization chromosome organization membraneless organelle assembly CENP-A containing chromatin assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly chromatin organization kinetochore assembly protein-containing complex assembly kinetochore organization cellular process cellular component organization or biogenesis meiotic chromosome segregation sexual reproduction reproductive process meiotic cell cycle process localization telomere localization meiosis I chromosome localization organelle localization meiotic nuclear division cell cycle chromosome segregation cell cycle process meiotic cell cycle organelle fission meiotic telomere clustering chromosome organization involved in meiotic cell cycle nuclear division chromosome localization to nuclear envelope involved in homologous chromosome segregation meiosis I cell cycle process nuclear chromosome segregation homologous chromosome segregation regulation of cellular process negative regulation of biological process siRNA-mediated heterochromatin formation negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation siRNA-mediated pericentric heterochromatin formation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulatory ncRNA-mediated gene silencing regulation of gene expression pericentric heterochromatin formation negative regulation of gene expression constitutive heterochromatin formation regulatory ncRNA-mediated heterochromatin formation biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process subtelomeric heterochromatin formation silent mating-type cassette heterochromatin formation	intracellular anatomical structure chromosome, subtelomeric region intracellular membraneless organelle chromatin chromosome heterochromatin chromosomal region intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, telomeric region subtelomeric heterochromatin cytoplasm intracellular anatomical structure chromosome, subtelomeric region intracellular membraneless organelle chromatin chromosome heterochromatin chromosomal region intracellular organelle cellular anatomical structure organelle membraneless organelle chromosome, telomeric region subtelomeric heterochromatin cytoplasm cytosol mating-type region heterochromatin membrane-bounded organelle protein-containing complex ubiquitin ligase complex nucleus membrane-enclosed lumen nuclear protein-containing complex transferase complex intracellular organelle lumen CLRC complex cullin-RING ubiquitin ligase complex nucleoplasm methyltransferase complex histone methyltransferase complex catalytic complex Cul4-RING E3 ubiquitin ligase complex intracellular membrane-bounded organelle nuclear ubiquitin ligase complex organelle lumen intracellular protein-containing complex nuclear lumen pericentric heterochromatin chromosome, centromeric region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR050505	WD repeat-containing protein 55/POC1	Family
A [auth B], B [auth A]	IPR019775	WD40 repeat, conserved site	Conserved Site
A [auth B], B [auth A]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A [auth B], B [auth A]	IPR001680	WD40 repeat	Repeat
A [auth B], B [auth A]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.