4O6X | pdb_00004o6x

Crystal structure of human Ankyrin G death domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	DEATH domain	8073234	3000069	SCOP2B (2022-06-29)
A	SCOP2 Family	DEATH domain, DD	8073233	4000378	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DEATH domain	8073234	3000069	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Fic	e4o6xB1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Fic	ECOD (v294.1)
A	Fic	e4o6xA1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Fic	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)
A	1.10.533.10	Mainly Alpha	Orthogonal Bundle	Death Domain, Fas	Death Domain, Fas	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00531	Death domain (Death)	Death domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Ankyrin-3	cytoskeletal protein binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding cadherin binding spectrin binding protein-containing complex binding transmembrane transporter binding channel regulator activity ion channel regulator activity molecular function regulator activity sodium channel regulator activity cytoskeletal protein binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding cadherin binding spectrin binding protein-containing complex binding transmembrane transporter binding channel regulator activity ion channel regulator activity molecular function regulator activity sodium channel regulator activity transporter regulator activity structural constituent of cytoskeleton structural molecule activity transporter activator activity molecular function activator activity channel activator activity cytoskeletal anchor activity	maintenance of protein location maintenance of protein location in plasma membrane protein localization to cell periphery cellular localization maintenance of protein location in membrane protein localization to plasma membrane localization within membrane protein localization to membrane maintenance of location maintenance of location in cell localization macromolecule localization maintenance of protein location in cell cellular process maintenance of protein location maintenance of protein location in plasma membrane protein localization to cell periphery cellular localization maintenance of protein location in membrane protein localization to plasma membrane localization within membrane protein localization to membrane maintenance of location maintenance of location in cell localization macromolecule localization maintenance of protein location in cell cellular process intracellular protein localization Golgi to plasma membrane transport establishment of protein localization post-Golgi vesicle-mediated transport transport establishment of protein localization to membrane establishment of protein localization to plasma membrane Golgi to plasma membrane protein transport establishment of localization vesicle-mediated transport vesicle-mediated transport to the plasma membrane protein transport Golgi vesicle transport membrane organization cellular component organization plasma membrane organization cellular component organization or biogenesis endomembrane system organization regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process protein localization to axon multicellular organismal process axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development regulation of biological quality positive regulation of membrane potential regulation of membrane potential regulation of membrane depolarization during cardiac muscle cell action potential membrane depolarization during action potential membrane depolarization during cardiac muscle cell action potential action potential positive regulation of membrane depolarization positive regulation of membrane depolarization during cardiac muscle cell action potential regulation of membrane depolarization membrane depolarization cardiac muscle cell action potential regulation of membrane depolarization during action potential regulation of localization regulation of potassium ion transport regulation of transport regulation of monoatomic ion transport metal ion transport monoatomic ion transport potassium ion transport monoatomic cation transport regulation of metal ion transport cellular component biogenesis cellular component assembly membrane biogenesis membrane assembly regulation of homotypic cell-cell adhesion positive regulation of cell adhesion regulation of cell adhesion homotypic cell-cell adhesion positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of homotypic cell-cell adhesion regulation of cell-cell adhesion positive regulation of cell communication cell communication by electrical coupling positive regulation of cell communication by electrical coupling cell communication regulation of cell communication regulation of cell communication by electrical coupling regulation of protein localization protein targeting positive regulation of establishment of protein localization regulation of protein targeting to membrane regulation of establishment of protein localization protein targeting to membrane regulation of cellular localization regulation of protein targeting positive regulation of protein targeting to membrane magnesium ion homeostasis inorganic ion homeostasis chemical homeostasis homeostatic process monoatomic ion homeostasis monoatomic cation homeostasis mitotic cell cycle process cytoskeleton-dependent cytokinesis mitotic cytokinesis cytokinesis cell division cell cycle mitotic cell cycle cell cycle process cell junction organization neuromuscular junction development synapse organization cellular response to stimulus response to stimulus signaling signal transduction system process nervous system process transmission of nerve impulse neuronal action potential negative regulation of ion transmembrane transporter activity negative regulation of potassium ion transmembrane transporter activity monoatomic ion transmembrane transport negative regulation of monoatomic ion transport negative regulation of biological process potassium ion transmembrane transport regulation of transmembrane transporter activity negative regulation of transport regulation of delayed rectifier potassium channel activity regulation of monoatomic ion transmembrane transport negative regulation of transmembrane transport monoatomic cation transmembrane transport negative regulation of monoatomic ion transmembrane transport negative regulation of delayed rectifier potassium channel activity negative regulation of voltage-gated potassium channel activity negative regulation of cellular process negative regulation of cation transmembrane transport negative regulation of potassium ion transport negative regulation of transporter activity negative regulation of molecular function negative regulation of potassium ion transmembrane transport regulation of potassium ion transmembrane transport transmembrane transport regulation of molecular function regulation of transmembrane transport regulation of monoatomic cation transmembrane transport cellular response to metal ion cellular response to chemical stimulus response to metal ion response to chemical response to magnesium ion cellular response to magnesium ion regulation of sodium ion transport positive regulation of sodium ion transport positive regulation of transport positive regulation of monoatomic ion transport sodium ion transport	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane sarcolemma T-tubule intracellular anatomical structure intracellular membraneless organelle cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane sarcolemma T-tubule intracellular anatomical structure intracellular membraneless organelle Z disc sarcomere intracellular organelle I band organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex cytosol costamere basal part of cell basal plasma membrane basolateral plasma membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection axon main axon axon initial segment neuromuscular junction membrane-bounded organelle Golgi apparatus intracellular membrane-bounded organelle endomembrane system sarcoplasm endoplasmic reticulum sarcoplasmic reticulum cell-cell junction intercalated disc anchoring junction cell-cell contact zone node of Ranvier cell surface lytic vacuole vacuole lysosome lateral plasma membrane cytoskeleton spectrin-associated cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR040745	Ankyrin, UPA domain	Domain
A, B	IPR000906	ZU5 domain	Domain
A, B	IPR002110	Ankyrin repeat	Repeat
A, B	IPR051165	Multifunctional Ankyrin Repeat Domain-Containing Protein	Family
A, B	IPR000488	Death domain	Domain
A, B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B	IPR037971	Ankyrin-3, death domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q12955	status epilepticus intellectual disability-hypotonia-spasticity-sleep disorder syndrome bipolar disorder Hutchinson-Gilford progeria syndrome intellectual disability schizophrenia Grand Mal Status Epilepticus lung adenocarcinoma amyotrophic lateral sclerosis malignant glioma attention deficit hyperactivity disorder, inattentive type autosomal recessive non-syndromic intellectual disability bipolar I disorder Crohn disease pituitary cancer status epilepticus intellectual disability-hypotonia-spasticity-sleep disorder syndrome bipolar disorder Hutchinson-Gilford progeria syndrome intellectual disability schizophrenia Grand Mal Status Epilepticus lung adenocarcinoma amyotrophic lateral sclerosis malignant glioma attention deficit hyperactivity disorder, inattentive type autosomal recessive non-syndromic intellectual disability bipolar I disorder Crohn disease pituitary cancer ductal breast carcinoma in situ gastric carcinoma invasive ductal breast carcinoma lung benign neoplasm malignant colon neoplasm malignant mesothelioma atypical teratoid rhabdoid tumor myopathy B-cell chronic lymphocytic leukemia breast cancer Pick disease primitive neuroectodermal tumor endogenous depression sarcoidosis glioblastoma spina bifida ulcerative colitis large cell medulloblastoma lung cancer malignant ependymoma astrocytic tumor autism spectrum disorder medulloblastoma nephrosclerosis oligodendroglioma pilocytic astrocytoma dermatomyositis psoriasis gastric cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.