4LMG | pdb_00004lmg

Crystal structure of AFT2 in complex with DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	WRKY DNA-binding domain	8091616	3001868	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	WRKY DNA-binding domain	8091616	3001868	SCOP2B (2022-06-29)
B	SCOP2 Family	Iron-regulated transcriptional activator AFT2-like	8051183	4007231	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	WRKY DNA-binding domain	8091616	3001868	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	WRKY DNA-binding domain	8091616	3001868	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Rep-A_N	e4lmgD1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Rep-A_N	ECOD (v294.1)
C	Rep-A_N	e4lmgC1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Rep-A_N	ECOD (v294.1)
B	AFT	e4lmgB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: NAC/WRKY/GCM/WOPR domain	F: AFT	ECOD (v294.1)
A	Rep-A_N	e4lmgA1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Rep-A_N	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08731	Transcription factor AFT (AFT)	Transcription factor AFT	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F, H	5'-D(APAPGPTPGPCPAPCPCPCPAPTP*T)-3'	-	-	-
E, G	5'-D(TPAPAPTPGPGPGPTPGPCPAPCP*T)-3'	-	-	-
A, B, C, D	Iron-regulated transcriptional activator AFT2	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity iron-sulfur cluster binding metal cluster binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis phosphatidylglycerol metabolic process glycerophospholipid metabolic process primary metabolic process cardiolipin metabolic process intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis phosphatidylglycerol metabolic process glycerophospholipid metabolic process primary metabolic process cardiolipin metabolic process phospholipid metabolic process organophosphate metabolic process phosphate-containing compound metabolic process glycerolipid metabolic process metabolic process cellular process phosphorus metabolic process lipid metabolic process cellular response to stimulus response to nutrient levels response to stimulus cellular response to starvation cellular response to iron ion starvation cellular response to nutrient levels cellular response to stress response to stress response to starvation regulation of phosphate transmembrane transport regulation of localization regulation of biological process regulation of cellular process regulation of transport transport phosphate ion transmembrane transport biological regulation regulation of phosphate transport establishment of localization transmembrane transport localization regulation of transmembrane transport phosphate ion transport inorganic anion transport positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR014842	Iron-regulated transcriptional activator AFT	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.