4K5U
Recognition of the BG-H Antigen by a Lamprey Variable Lymphocyte Receptor
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d4k5ub_ | Alpha and beta proteins (a/b) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | L domain-like | automated matches | automated matches | marine lamprey (Petromyzon marinus ) [TaxId: 7757 ], | SCOPe (2.08) |
B [auth A] | d4k5ua_ | Alpha and beta proteins (a/b) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | L domain-like | automated matches | automated matches | marine lamprey (Petromyzon marinus ) [TaxId: 7757 ], | SCOPe (2.08) |
C | d4k5uc_ | Alpha and beta proteins (a/b) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | L domain-like | automated matches | automated matches | marine lamprey (Petromyzon marinus ) [TaxId: 7757 ], | SCOPe (2.08) |
D | d4k5ud_ | Alpha and beta proteins (a/b) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | L domain-like | automated matches | automated matches | marine lamprey (Petromyzon marinus ) [TaxId: 7757 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | L domain-like | 8095996 | 3001010 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | L domain-like | 8095996 | 3001010 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Ngr ectodomain-like | 8047119 | 4002278 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | L domain-like | 8095996 | 3001010 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | L domain-like | 8095996 | 3001010 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | LRR_8_1 | e4k5uB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
B [auth A] | LRR_8_1 | e4k5uA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
C | LRR_8_1 | e4k5uC1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
D | LRR_8_1 | e4k5uD1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth B], B [auth A], C, D | VLRB (Variable lymphocyte receptor B) | VLRB | Petromyzon marinus (sea lamprey) | VLRB*01 | R-LIKE-DOMAIN LRRNT, R-LIKE-DOMAIN LRRV1, R-LIKE-DOMAIN LRRV2, R-LIKE-DOMAIN LRRV3, R-LIKE-DOMAIN LRRV4, R-LIKE-DOMAIN LRRV5, R-LIKE-DOMAIN LRRCT | RPI | VLRB | IMGT (202436-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D | PF13855 | Leucine rich repeat (LRR_8) | Leucine rich repeat | - | Repeat |
A [auth B], B [auth A], C, D | PF01462 | Leucine rich repeat N-terminal domain (LRRNT) | Leucine rich repeat N-terminal domain | - | Family |
A [auth B], B [auth A], C, D | PF11921 | Domain of unknown function (DUF3439) (DUF3439) | Domain of unknown function (DUF3439) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A], C, D | Variable lymphocyte receptor | - | - |