Annotations: 4IM9

Cystal structure of DnaG primase C-terminal domain from Vibrio cholerae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4im9c1	All alpha proteins	DNA primase DnaG, C-terminal domain	DNA primase DnaG, C-terminal domain	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
C	d4im9c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
B	d4im9b1	All alpha proteins	DNA primase DnaG, C-terminal domain	DNA primase DnaG, C-terminal domain	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
B	d4im9b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)
A	d4im9a_	All alpha proteins	DNA primase DnaG, C-terminal domain	DNA primase DnaG, C-terminal domain	automated matches	automated matches	(Vibrio cholerae O395 ) [TaxId: 345073 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	QueF	e4im9C1	A: alpha arrays	X: Glycosyl hydrolase domain-like	H: alpha/alpha toroid	T: alpha/alpha toroid	F: QueF	ECOD (v295.2)
B	QueF	e4im9B1	A: alpha arrays	X: Glycosyl hydrolase domain-like	H: alpha/alpha toroid	T: alpha/alpha toroid	F: QueF	ECOD (v295.2)
A	QueF	e4im9A1	A: alpha arrays	X: Glycosyl hydrolase domain-like	H: alpha/alpha toroid	T: alpha/alpha toroid	F: QueF	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
B	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)
A	1.10.860.10	Mainly Alpha	Orthogonal Bundle	DNAb Helicase	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	DNA primase	DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding transition metal ion binding DNA binding binding nucleic acid binding DNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	DNA-templated DNA replication DNA replication, synthesis of primer RNA metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA replication biosynthetic process metabolic process DNA-templated DNA replication DNA replication, synthesis of primer RNA metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA replication biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR013173	DNA primase DnaG, DnaB-binding domain	Domain
A, B, C	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	Homologous Superfamily
A, B, C	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	Homologous Superfamily
A, B, C	IPR034151	Bacterial DnaG primase, TOPRIM domain	Domain
A, B, C	IPR030846	DNA primase DnaG, bacteria	Family
A, B, C	IPR006295	DNA primase, DnaG	Domain
A, B, C	IPR006171	TOPRIM domain	Domain
A, B, C	IPR002694	Zinc finger, CHC2-type	Domain
A, B, C	IPR036977	DNA Primase, CHC2-type zinc finger	Homologous Superfamily
A, B, C	IPR013264	DNA primase DNAG, catalytic core, N-terminal	Domain
A, B, C	IPR050219	DnaG Primase	Family
A, B, C	IPR019475	DNA primase, DnaB-helicase binding domain	Domain

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